PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G0634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 39910 Da PI: 7.1369 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.3 | 2.5e-52 | 22 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp k+ +e+ew+fFs+rd+ky++g r+nra++sgyWkatg+d+++l+ ++ Gh_A04G0634 22 LPPGFRFHPSDEELIVHYLKNKVTSNPLPA-SIIAEIDLYKYNPWELPIKALFGEDEWFFFSPRDRKYPNGARPNRAAASGYWKATGTDRPILTLcGT 118 79****************************.89***************76667999************************************998788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvfykgr pkg+kt+W+mheyrl Gh_A04G0634 119 KSIGVKKALVFYKGRPPKGTKTEWIMHEYRL 149 89***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-62 | 19 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.945 | 22 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-27 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MLGGSSMEEI PAAGNNSSEI QLPPGFRFHP SDEELIVHYL KNKVTSNPLP ASIIAEIDLY 60 KYNPWELPIK ALFGEDEWFF FSPRDRKYPN GARPNRAAAS GYWKATGTDR PILTLCGTKS 120 IGVKKALVFY KGRPPKGTKT EWIMHEYRLL ETMIWTPKRK GSMRLDDWVL CRVRQKASIQ 180 RNSWEDRNIS SHEPADSFYV PNSIEPWPSN TNHNVDIGKT YLFNDCPMLP YIFASQDLPC 240 FDTTSSISFQ SSYKSCTSLQ EANSGNNNMQ ISFSFLQNLF NPLKRESMEE GSFVPTSCKK 300 LKNTEKDCSE MNFYRSNHLE NSDSSPHQWN PMMQYDQKLN LPGFTETD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-69 | 18 | 178 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-69 | 18 | 178 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-69 | 18 | 178 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-69 | 18 | 178 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-69 | 18 | 178 | 16 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-69 | 18 | 178 | 16 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-69 | 18 | 178 | 16 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-69 | 18 | 178 | 16 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-69 | 18 | 178 | 16 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-69 | 18 | 178 | 16 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-69 | 18 | 178 | 16 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-69 | 18 | 178 | 16 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-69 | 18 | 178 | 13 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-69 | 18 | 178 | 13 | 167 | NAC domain-containing protein 19 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847216 | 0.0 | KC847216.1 Gossypium hirsutum NAC domain protein NAC39 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017615265.1 | 0.0 | PREDICTED: NAC transcription factor 25-like | ||||
Swissprot | Q8GY42 | 2e-81 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A2P5YUN4 | 0.0 | A0A2P5YUN4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G418700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17560 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-83 | NAC domain containing protein 25 |