PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G1892

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 232aa MW: 26224.8 Da PI: 9.1635

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G1892	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.3	3.5e-22	17	62	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr g++KKA+EL++LC++e+ +i+fs+ +k++ + Gh_A03G1892 17 KNNSNLQVTFSKRRSGLFKKASELCTLCGVEIGIIVFSPGNKVFSF 62 89****************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.0E-31	6	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.787	6	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.03E-27	7	82	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.00E-34	7	78	No hit	No description
PRINTS	PR00404	3.9E-18	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-24	16	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-18	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-18	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MGKKSLGRQK VEMVKMKNNS NLQVTFSKRR SGLFKKASEL CTLCGVEIGI IVFSPGNKVF 60 SFGHPEIGNV IDRYVNGNPP DNSGTLHLIQ AHRNANVREL NMQLTELVNQ IEIEKRRGEE 120 LNQMRRASQS QYWWESPIEE QNPQQLQQLK SALEELKKNV AKQVEKLLIQ TTNSQPFFVG 180 SSSTGMFPNN VEFDPNTMSQ GYNNVPNMIP PGFNPNPELY NPCPPGFGHA FF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
3kov_B	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
3kov_I	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
3kov_J	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
3p57_A	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
3p57_B	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
3p57_C	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
3p57_D	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
3p57_I	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
3p57_J	6e-17	7	85	1	79	Myocyte-specific enhancer factor 2A
5f28_A	6e-17	6	85	1	80	MEF2C
5f28_B	6e-17	6	85	1	80	MEF2C
5f28_C	6e-17	6	85	1	80	MEF2C
5f28_D	6e-17	6	85	1	80	MEF2C
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269\|PubMed:18334668}.
Uniprot	TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:18334668}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016727587.1	1e-171	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	3e-61	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A1U8ML82	1e-170	A0A1U8ML82_GOSHI; agamous-like MADS-box protein AGL62
STRING	Gorai.005G263100.1	1e-169	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-63	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]