PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G1136 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 573aa MW: 64369.7 Da PI: 4.9475 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 78.5 | 8.2e-25 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl Gh_A03G1136 202 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 255 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 81.4 | 2.8e-27 | 22 | 130 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l+k y ev++ ++eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ Ga Gh_A03G1136 22 VLVVDDDPTWLKILEKMLKKCSY-EVTTSCLAREALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 116 89*********************.***************999999**********************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ ++el++ Gh_A03G1136 117 DYLLKPIRMKELRN 130 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.3E-43 | 19 | 165 | No hit | No description |
SuperFamily | SSF52172 | 4.27E-35 | 19 | 144 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.7E-31 | 20 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.886 | 21 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.4E-24 | 22 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.16E-29 | 23 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 200 | 260 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.2E-18 | 200 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-22 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-8 | 204 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MVLAESGFSS PRNDAFPAGL RVLVVDDDPT WLKILEKMLK KCSYEVTTSC LAREALNLLR 60 ERKDGYDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMKG VQHGACDYLL 120 KPIRMKELRN IWQHVFRKKI HEVRDIESLE GFESIQMTRS GYDLFDDGHF LSGDDTTSGR 180 KRKDADNKHD DRELSDPSST KKARVVWTVD LHQKFVKAVN QIGFDKVGPK KILDLMNVPW 240 LTRENVASHL QKYRLYLSRL QKESDIKNSF IGMKHSDLPS KDSTASFGPH KAMNMIPDDV 300 PNSTYSFSAS NSQAQNVDLK GQGDLKGITS APMAEPKGAL SVDIRDSHEA KSTQMSFDHS 360 LGSVDSAVSF ASFNSTTPLQ YPWTEIPEIQ FKQECESLHL ENGFSQLPLP GPSMIENEAN 420 RSRIEVKPLL DDCRSNFVEH LGPVGAEDLF PIQSKSQSLN NQVFDLISAT KSSMKTQDVG 480 LNYLADSEFA LRNLNASGVG VPLATLSEDL QICWLQGDCY PMNYGLQDLE CSTYDNPALM 540 AETPFHLYDV LRFDHEHLFD PAEYYAIDQG LFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-18 | 198 | 260 | 1 | 63 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11646 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ524920 | 7e-70 | HQ524920.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BJGHL simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016665966.1 | 0.0 | PREDICTED: two-component response regulator ARR11-like isoform X1 | ||||
Swissprot | Q5N6V8 | 1e-146 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A1U8HIR0 | 0.0 | A0A1U8HIR0_GOSHI; two-component response regulator ARR11-like isoform X1 | ||||
STRING | Gorai.005G173300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8066 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-133 | response regulator 11 |
Publications ? help Back to Top | |||
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