PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1023
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 283aa    MW: 29806.3 Da    PI: 7.9809
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1023genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.7e-382685362
       zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 ++ l+cprCdst tkfCyynny+lsqPryfCk+CrryWt+GG+lrnvPvGgg+rk+ k+s
  Gh_A03G1023 26 TEPLPCPRCDSTSTKFCYYNNYNLSQPRYFCKSCRRYWTQGGTLRNVPVGGGTRKSSKRS 85
                 57899**************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-232779IPR003851Zinc finger, Dof-type
PfamPF027019.5E-332883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.182983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MPADSGDRRP VRAPGTMGSH PPAKLTEPLP CPRCDSTSTK FCYYNNYNLS QPRYFCKSCR  60
RYWTQGGTLR NVPVGGGTRK SSKRSRSSSS LLSPSVATSS SSSVTHEAES VHMAVNPVSV  120
LPGTGVKPEV GLADVNLNDT VDLPVSGGFT SFLNSQGEGY LTLGGYGLGT GSGFDGVWGY  180
PGNGYLGVYN GGDGDEPADA VAGATGCNTW QATGNVEGGG GLVDGDCFGW PGLAISAPGK  240
AGHSRVMRIA GFSYQLFNHY LIIPRGYFVR NLTSFDPCFV LMW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.118970.0boll| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665700.11e-173PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBLA0A1U8HI151e-171A0A1U8HI15_GOSHI; dof zinc finger protein DOF1.6-like
STRINGGorai.005G105200.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.17e-37Dof family protein