PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | DBB | ||||||||
Protein Properties | Length: 170aa MW: 18821.4 Da PI: 7.4348 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.8 | 9.4e-08 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++ fC ++ lC++C ++ H Gh_A02G1620 4 LCDACESAPAIVFCAADEAALCHSCDEKVH 33 6**************************998 PP | |||||||
2 | zf-B_box | 18.4 | 4.7e-06 | 53 | 88 | 3 | 34 |
zf-B_box 3 erkCpeHe....ekelqlfCedCqqllCedClleeH 34 ++C+ +e + + ++Ce +++ lC +C + H Gh_A02G1620 53 VPRCDICEnapgMHTAFFYCEIDGSSLCLQCDMIVH 88 689****9555433499***************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.21 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.15E-7 | 3 | 45 | No hit | No description |
SMART | SM00336 | 1.4E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.4E-6 | 4 | 42 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-5 | 51 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.98E-4 | 54 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MRILCDACES APAIVFCAAD EAALCHSCDE KVHMCNKLAS RHVRVGLANP SAVPRCDICE 60 NAPGMHTAFF YCEIDGSSLC LQCDMIVHIG GKKTHGRYLL LRQRVEFPGD TSVEPSENGR 120 GQNQLTIGEN QQNHKVSPFK TDSTKMIDLN MKPPHRIHGQ ASNNQVQNRF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22783 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016724753.1 | 1e-122 | PREDICTED: B-box zinc finger protein 19-like isoform X1 | ||||
Swissprot | C0SVM5 | 4e-70 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1U8MGN6 | 1e-121 | A0A1U8MGN6_GOSHI; B-box zinc finger protein 19-like isoform X1 | ||||
STRING | Gorai.003G011200.1 | 1e-121 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2168 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 2e-72 | DBB family protein |