PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 170aa    MW: 18821.4 Da    PI: 7.4348
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1620genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.4e-08433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+ +++ fC  ++  lC++C ++ H
  Gh_A02G1620  4 LCDACESAPAIVFCAADEAALCHSCDEKVH 33
                 6**************************998 PP

2zf-B_box18.44.7e-065388334
     zf-B_box  3 erkCpeHe....ekelqlfCedCqqllCedClleeH 34
                  ++C+ +e     + + ++Ce +++ lC +C +  H
  Gh_A02G1620 53 VPRCDICEnapgMHTAFFYCEIDGSSLCLQCDMIVH 88
                 689****9555433499***************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
CDDcd000219.15E-7345No hitNo description
SMARTSM003361.4E-6447IPR000315B-box-type zinc finger
PfamPF006434.4E-6442IPR000315B-box-type zinc finger
SMARTSM003361.3E-551100IPR000315B-box-type zinc finger
CDDcd000211.98E-45488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MRILCDACES APAIVFCAAD EAALCHSCDE KVHMCNKLAS RHVRVGLANP SAVPRCDICE  60
NAPGMHTAFF YCEIDGSSLC LQCDMIVHIG GKKTHGRYLL LRQRVEFPGD TSVEPSENGR  120
GQNQLTIGEN QQNHKVSPFK TDSTKMIDLN MKPPHRIHGQ ASNNQVQNRF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.227830.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724753.11e-122PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM54e-70BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1U8MGN61e-121A0A1U8MGN6_GOSHI; B-box zinc finger protein 19-like isoform X1
STRINGGorai.003G011200.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-72DBB family protein