PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1527 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 575aa MW: 65343.3 Da PI: 8.9047 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.5 | 1.8e-16 | 23 | 113 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 fk+ d+ ++g l +p+kf+++hg++ ++ +l +sg++W+v+l +k+ g++++++GW e + L+ g +vF++dg+s+f +v +f++ Gh_A02G1527 23 FKII-LQDTIQNGKLGIPRKFVKNHGNSMSSP--AMLSVPSGEVWKVEL--TKCNGKIWFENGWLELSNHYSLEFGHLLVFRYDGNSNF--HVVIFDR 113 4544.468899999*********999886665..9999***********..**********************************9999..**99997 PP | |||||||
2 | B3 | 57.4 | 2.6e-18 | 240 | 338 | 2 | 96 |
EEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + v+ ps+v+ s rl +p +f+++h +++ +s +tl ++sg++W v+++ kk+ +y+lt GW Fv++n++++gD + F+l+++ e+++ Gh_A02G1527 240 LVVMQPSYVGLShskgYRLAIPANFVRKHLMEELCS--ITLCNSSGKTWIVTFKNnqiGKKRTSYLLT-GWGTFVHDNNIRVGDACAFELINSIEKSF 334 5566666666554555899**********8787776..9999***********777656666668888.*********************98744445 PP EEEE CS B3 93 vvkv 96 +v + Gh_A02G1527 335 NVVI 338 6555 PP | |||||||
3 | B3 | 55.9 | 7.6e-18 | 400 | 493 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 vl ps++ +r+ +p fa+++ k +k+ +l ++g+sW v ++ + + + ++++GW++F ++n+L++gD++vF+l+ e++++v++ Gh_A02G1527 400 VLQPSYS---RRMNIPVIFARKYLAK--MHKEAILLLSNGKSWPVIYCQhkiEST--GanAIFGSGWRRFSHDNKLEVGDSCVFELIMAAETSMKVTI 490 4433333...4678*********545..3457899999*********76543333..3569**************************88888899999 PP E-S CS B3 97 frk 99 ++k Gh_A02G1527 491 YKK 493 886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 17 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-23 | 18 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.58E-18 | 20 | 112 | No hit | No description |
PROSITE profile | PS50863 | 12.999 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-18 | 22 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-13 | 23 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-23 | 231 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.07E-22 | 234 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.19E-20 | 237 | 339 | No hit | No description |
SMART | SM01019 | 1.6E-15 | 239 | 342 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.704 | 243 | 342 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-15 | 251 | 338 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-24 | 388 | 494 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-22 | 390 | 493 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.916 | 394 | 494 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.09E-20 | 395 | 492 | No hit | No description |
SMART | SM01019 | 8.2E-17 | 396 | 494 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-16 | 400 | 493 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MASSSYQQGN DHLKFISNSP HFFKIILQDT IQNGKLGIPR KFVKNHGNSM SSPAMLSVPS 60 GEVWKVELTK CNGKIWFENG WLELSNHYSL EFGHLLVFRY DGNSNFHVVI FDRTATEILY 120 PYTRYNHIHR RSNIDKSKDD DSTPNLEDIS TSRKLREKSQ MPCPQPCKMM HSTNSAIKTE 180 IECNGKSEFL AQQIRYEGCP ARNDDKSTRH RIIQQLKPHE KDDALERASK TFKSENPFFL 240 VVMQPSYVGL SHSKGYRLAI PANFVRKHLM EELCSITLCN SSGKTWIVTF KNNQIGKKRT 300 SYLLTGWGTF VHDNNIRVGD ACAFELINSI EKSFNVVIYQ GPHTKCYQSL SSTDIIRPMK 360 RKDQSYASPS GSETLTALEK AKAFQVASAF KSEYPFFISV LQPSYSRRMN IPVIFARKYL 420 AKMHKEAILL LSNGKSWPVI YCQHKIESTG ANAIFGSGWR RFSHDNKLEV GDSCVFELIM 480 AAETSMKVTI YKKQAVKDSS LADNSREKQV ELHESSVIGT KSALMNEKED MFNLLLDYNC 540 DASGETLDDI LMSNISSPGK ALEEASQSYQ SFTRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-15 | 366 | 492 | 17 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-15 | 366 | 492 | 17 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578202 | 1e-125 | JX578202.1 Gossypium hirsutum clone NBRI_GE10175 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644895.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0D2MI58 | 0.0 | A0A0D2MI58_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G020000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14219 | 7 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-41 | B3 family protein |