PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 507aa MW: 56020.5 Da PI: 6.3294 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.9 | 1.1e-35 | 24 | 115 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++++isws+ +nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i Gh_A02G1353 24 FLSKTYDVVDDPSTNSVISWSSANNSFVVWKVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTIS 111 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Gh_A02G1353 112 RRKP 115 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.6E-38 | 14 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.89E-34 | 19 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.1E-59 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.1E-31 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MDSLHDSISA ANAVATNGNT VPPFLSKTYD VVDDPSTNSV ISWSSANNSF VVWKVPEFSR 60 DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKTI SRRKPANVHS 120 NKQPQVHSSA VAACIEVGTF GLEEEVERLK RDKNVLMQEL VRLRQQQQAT DNQLQAVGQR 180 VQVMEQRQQQ MMSFLAKAMQ SPGFLSQLVQ QQNESKRHLT GGNKKRRLPR QDEENLTGEH 240 GTIFPNRQIV KFQPSLNEAA KAMLHQILKM NTSPRLEPSI DNPDAFMIDG IPPSNALDSG 300 SCSSRISGVT LSEVPPASGQ SYLQAESGFP NSCPSTATHL TTENTKLGKI SDTNQHKYKK 360 EAVFPSVPLM QGAVTDNNVG FTNATPTNAT PGGGSERVNA EYVDPVSVIL NGARPIQSDD 420 FSSDHDMDML LDGTPKLPAI SDVFWEQFLT TSPPSGDSDE INSSSPENGA SCEPELLLGK 480 NNGWDRIQHT NHLTEQMGLL TTDSQRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-26 | 15 | 113 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-26 | 15 | 113 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-26 | 15 | 113 | 20 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3792 | 2e-73 | ovule |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 73858930 | 2e-73 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ702446 | 0.0 | KJ702446.1 Gossypium hirsutum heat shock transcription factor (HSF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016710594.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_016710602.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_016710610.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_016710618.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_016710626.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Swissprot | O81821 | 1e-160 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A1U8L7M3 | 0.0 | A0A1U8L7M3_GOSHI; heat stress transcription factor A-1e-like | ||||
STRING | Gorai.003G053300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-135 | heat shock factor 3 |
Publications ? help Back to Top | |||
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