PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G1288

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 237aa MW: 25789.2 Da PI: 7.8453

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G1288	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	181	1e-56	25	120	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plkvyl+kyre+egek Gh_A02G1288 25 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGEK 120 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-54	21	133	IPR009072	Histone-fold
SuperFamily	SSF47113	3.44E-41	27	132	IPR009072	Histone-fold
Pfam	PF00808	2.2E-27	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	9.8E-20	58	76	No hit	No description
PROSITE pattern	PS00685	0	61	77	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	9.8E-20	77	95	No hit	No description
PRINTS	PR00615	9.8E-20	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MTGKRNQTSP VGSPSSGNIS DSSSKEQDRF LPIANVSRIM KKSLPANAKI SKEAKETVQE 60 CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE NYVGPLKVYL NKYRETEGEK 120 NSMARQEDHH HHHHHQSPTS YGLISHGGAN EFNNVNAGIS SSANAADHFQ GYNSGVGGFF 180 SLGSHPQSYG DHGRRGIGGY GENLMAAAGG FNTSRIGENG DGNGNRTMAA HFHRVDW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	9e-49	25	115	2	92	Transcription factor HapC (Eurofung)
4g92_B	9e-49	25	115	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393597	1e-127	GQ393597.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0562 SSR marker CGR5603 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016742278.1	1e-178	PREDICTED: nuclear transcription factor Y subunit B-like
TrEMBL	A0A1U8NW20	1e-177	A0A1U8NW20_GOSHI; nuclear transcription factor Y subunit B-like
STRING	Gorai.003G046600.1	1e-139	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20563	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-64	nuclear factor Y, subunit B3