PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G0979 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 696aa MW: 77882 Da PI: 6.6383 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.4e-24 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+kvlt sd++++g +++ +k+a+e+ +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++el+ Gh_A02G0979 131 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGELR 226 99****************************9555556679************************************************..449999** PP EEEE- CS B3 94 vkvfr 98 v+v+r Gh_A02G0979 227 VGVRR 231 ***98 PP | |||||||
2 | Auxin_resp | 105.1 | 8.2e-35 | 257 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F v+Y+Pr+ s+F++ ++k+++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p W++SkWrsLk Gh_A02G0979 257 ASHAVSTQTLFVVYYKPRT--SQFIIGLNKYLEALSNKFTVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-YWKDSKWRSLK 336 789***************6..9*************************************************.9********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.18E-40 | 119 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-41 | 124 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.78E-21 | 129 | 231 | No hit | No description |
PROSITE profile | PS50863 | 12.351 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-22 | 131 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-24 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.3E-32 | 257 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.3E-7 | 548 | 619 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.77E-15 | 576 | 659 | No hit | No description |
PROSITE profile | PS51745 | 28.257 | 583 | 664 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 8.0E-4 | 606 | 657 | No hit | No description |
Pfam | PF02309 | 3.1E-7 | 629 | 668 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MANRGGVFSQ TNNVSSEVIG NGGDDLYMEL WKLCAGPLVE APRARERVYY FPQGHMEQLE 60 ASTNQELNQR IPLFNLPSKI LCSVVHIQFL AEQETDEVYA QITLMPEPNQ PEPTTPDACL 120 PEPPKPTVHS FCKVLTASDT STHGGFSVLR KHATECLPPL DMNQATPTQE LVAKDLHGYE 180 WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ENGELRVGVR RVAHQQSSMP 240 TSVISSQSMH LGVLATASHA VSTQTLFVVY YKPRTSQFII GLNKYLEALS NKFTVGMRFK 300 MRFEGEDSPE RRFSGTIVGV EDFSPYWKDS KWRSLKVQWD EPASIPRPDR VSPWEIEPFA 360 APIPPTLGQP VAAKNKRPRP TAEIPALDLS STASAPWNSG VMHTHDLMRR NITAEANRNE 420 NHVIWHMQTE MSSSCTSVLK TQNEGSWLSS PCMSVSKHRF PDARDDSKCA SGWPVLSGLS 480 NPQVNNDSTF DPKEKVKKSE TASSCRLFGI ELINHSASSR QLERTPTQLS TMTASTAEGH 540 HTLSPNNSCQ KSEISKDSNE KQEQLQLQAK EIQSRQSCPS STRSRTKVQM QGVAVGRAVD 600 LAMLEGYDQL IDELEEMFDI KGELRPRNKW EIVYTDDEGD MMLVGDDPWQ EFCSMVRRIF 660 ICLSQDVKKL STGSKLPMAC IEGGEGTVIS SESIEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldw_A | 1e-177 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldw_B | 1e-177 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldx_A | 1e-177 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldx_B | 1e-177 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 375 | 379 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19957 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX585015 | 2e-61 | JX585015.1 Gossypium hirsutum clone NBRI_GE18462 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016741602.1 | 0.0 | PREDICTED: auxin response factor 9-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A1U8NRI7 | 0.0 | A0A1U8NRI7_GOSHI; Auxin response factor | ||||
STRING | Gorai.003G078000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |