PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G0813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 288aa MW: 31098.6 Da PI: 6.863 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.6 | 1.3e-16 | 198 | 234 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg+ Gh_A02G0813 198 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKGT 234 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.544 | 66 | 101 | IPR010399 | Tify domain |
SMART | SM00979 | 4.1E-8 | 66 | 101 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.1E-10 | 69 | 100 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.531 | 133 | 175 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.3E-16 | 133 | 175 | IPR010402 | CCT domain |
SMART | SM00401 | 3.5E-16 | 192 | 245 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-11 | 196 | 243 | No hit | No description |
CDD | cd00202 | 8.05E-16 | 197 | 244 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-15 | 197 | 238 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 198 | 225 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.7E-14 | 198 | 234 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.671 | 198 | 251 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MYGQSQPMNI PASIADNDVS ASAPANNHQS VSYDAHPLDD GVGVDDVSAD PLYVTSTPSD 60 LAIVQRVDGA SQLTLSFRGQ VYVFDAITPE KFHAVLLLLG VSELTSGPHG VEMSAQNQRV 120 VLDFPRGSNQ PHRAASLDRF RQKRKERCFD KKVRYSVRQE VALRMQRNKG QFTSAKKSEG 180 AHSWGSSQED DNLADGICTH CGISSKSTPM MRRGPSGPRS LCNACGLFWA NKGTLRDIPK 240 KTQDLSLVPV QQGECETNDS NSGTAIPTTQ SNVVSFSNGD GSALIAEN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.18206 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634894.1 | 0.0 | PREDICTED: GATA transcription factor 25 isoform X1 | ||||
Swissprot | Q9LRH6 | 3e-79 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A1C8V7B7 | 0.0 | A0A1C8V7B7_GOSAR; ZML1 (Fragment) | ||||
STRING | Gorai.005G097100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 1e-81 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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