PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G0124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 29778.9 Da PI: 8.4082 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.3 | 5.5e-28 | 89 | 177 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYAk++GF +r+ +s+k + +g+i++r++ C+keg++++++k+ + + r+r+++r gC a+++vk+ek gk+ +tk+++eHnH+l+ Gh_A02G0124 89 FYDEYAKRMGFLTRIISSRKCELDGSIIHRRLACNKEGFNQNKQKSIRVRVRKRESKREGCMARMNVKREKPGKYIITKFVKEHNHPLF 177 9*********************************************999**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-24 | 89 | 177 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MERIVITESC IKGESGISEA DKSKEDKVLI RESCLDGESG VTEVEKSKEE KILVTKSCGG 60 DESGLCKLNL NQEPYEGMLF ESMQAAKAFY DEYAKRMGFL TRIISSRKCE LDGSIIHRRL 120 ACNKEGFNQN KQKSIRVRVR KRESKREGCM ARMNVKREKP GKYIITKFVK EHNHPLFVTS 180 GKDQPYTDDK DKKIQELSSK LNQANEELVS CREQLCAFLA SIEEQANQLS KKVEGVVRNI 240 KEVESRDHHS HNLEHSWCSR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016713896.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A1U8LH16 | 0.0 | A0A1U8LH16_GOSHI; protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
STRING | EOY04866 | 1e-114 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19294 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 8e-50 | FAR1 family protein |