PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0136
Common NameZFP1
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 341aa    MW: 38595.3 Da    PI: 7.3283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0136genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.5e-10112135326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    +C++++r+ +C++Gd C FaHg
  Gh_A01G0136 112 STICSDYRRGSECPRGDDCEFAHG 135
                  569******99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.26E-6108139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314109137IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6109136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-7110137IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-8112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4142173IPR000571Zinc finger, CCCH-type
SMARTSM003562.6145168IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.052145169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTTVYDPSHH LTSKNLCFKD LEIPPRKKQL HCCPNAAAME LPHHEARLHK YLPSNEDDDG  60
TDDPYGTDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPTRYQY SSTICSDYRR  120
GSECPRGDDC EFAHGVFECW LHPTRYRTEA CKDGKNCKRK VCFFAHSSRE LRLLPESPPP  180
LKYKNPDKNY NHCCLFCRSV TSSSSLSPTS TLLGLSHFSR SPSLSPPLSP LKHQQRTPRY  240
GGDRISIFGT EMTTSYDDVL LKEVMSCLGT MNLSEVTSPM APTANTNIPW LDVSFKGAPS  300
MVSPSGSGEY FNGGGDDEKN NGNGVVLDHD LDLGWVNELL M
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO604605110.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8878950.0AY887895.1 Gossypium hirsutum putative CCCH-type zinc finger transcription factor (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727117.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
RefseqXP_016751829.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A1U8PNL60.0A0A1U8PNL6_GOSHI; zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A2P5W3E60.0A0A2P5W3E6_GOSBA; Uncharacterized protein
STRINGGorai.002G020100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-61C3H family protein