PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037364001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 329aa    MW: 35729.6 Da    PI: 9.2813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037364001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034192214123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC  C+ksF++   L  H+ +H
  GSVIVT01037364001 192 HKCRTCNKSFPTGQALGGHQTSH 214
                        79**************9999988 PP
2zf-C2H211.20.0012255276223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        kC+ C+k+F++   L  H ++H
  GSVIVT01037364001 255 KCSTCHKVFPTLQALGGHRSSH 276
                        7**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.019113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058113140IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-7114135No hitNo description
PfamPF139121.3E-5114137IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-7187214No hitNo description
PfamPF139121.2E-10191216IPR007087Zinc finger, C2H2
SMARTSM003550.15192214IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806192219IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SMARTSM003552.2254276IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.746254281IPR007087Zinc finger, C2H2
PfamPF139123.2E-10255277IPR007087Zinc finger, C2H2
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGEAVPCDGE ERQGLGSAGL PENWLSLKPI NIPMGGGDEV DDGKSGKVIV EARLECNISS  60
KGLGCSEGFK GRMRARLDDQ GNRVGRSNKN KTRNLKNGSE SGVAENIGGT DQAKCPVCSK  120
GFHSKKAMYG HMRCHPEREW RGINPPPFAK TVSCSSVSQG IDGLSHASMT STEEGLAVGT  180
SKHAKQVVQK AHKCRTCNKS FPTGQALGGH QTSHRQKPAQ LATPRQEALI LSKNRNKLDQ  240
EIESESLLVA PRESKCSTCH KVFPTLQALG GHRSSHSYKN NLQAMDSALE LIELDWNVMA  300
FVHMHCLLKQ STRIRTSTVG WFCWPSIK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4834450.0AM483445.2 Vitis vinifera contig VV78X101062.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019075995.11e-117PREDICTED: uncharacterized protein LOC104879681
TrEMBLF6HAD31e-121F6HAD3_VITVI; Uncharacterized protein
STRINGVIT_06s0009g02460.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.16e-22C2H2-like zinc finger protein