PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032789001
Common NameVIT_13s0067g01350
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 298aa    MW: 33189.9 Da    PI: 7.2658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032789001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.1e-14111157354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+++E+rRRdriN  +++Lr+l+Pk+     +K++Ka+ L  +++++k+L
  GSVIVT01032789001 111 KSHSQAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLGSVIDHVKDL 157
                        79*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-13100162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.12E-12111160No hitNo description
PfamPF000101.8E-11111157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-13114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00225204239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGTISTTRCS EIEFTEWLIG SRINLLSPLY GDRFVAGYER GCLLDMENCL YSGWAQEADC  60
TQCDAAPVLP WLPPPHVSAS FQFHGFPSWS LPVEKMATED RSDERTATAS KSHSQAEKRR  120
RDRINAQLAT LRKLIPKSEK MDKAALLGSV IDHVKDLKRQ AMEVSDVFTV PTEVDEVTVD  180
CEFDQGLVPN NTIKTPENIF IKASVCCEDR PELFSELIRA LQGLKLTTIR ADMASLSGRT  240
KSILVLCSKD DSNSVCISTL KQSLKVVLSR IVSSSTASNY RITSKRQRFF LPSNFPQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3807870.0FQ380787.1 Vitis vinifera clone SS0ACG30YF24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272668.20.0PREDICTED: transcription factor bHLH51
TrEMBLD7T4M20.0D7T4M2_VITVI; Uncharacterized protein
STRINGVIT_13s0067g01350.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-37bHLH family protein