PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031848001
Common NameVIT_03s0063g01420
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 79aa    MW: 9137.52 Da    PI: 10.065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031848001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-173771796
                       E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                       ++p +f  + g+ +++++ ++l+++  + W+v +    + +r+++++GW  F++ n+Lk+gD+++F+l++++e  + v+v
  GSVIVT01031848001  3 RIPQSFS-AAGHFPPSKMRVVLRNSAEKAWDVSC--IYHARRHYFSRGWAPFARYNNLKQGDVCIFELVNKDE--MQVHV 77
                       5899996.4444567889****************..777778*************************986443..45554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.762178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-22277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-16378No hitNo description
SuperFamilySSF1019361.7E-19377IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-15376IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MQRIPQSFSA AGHFPPSKMR VVLRNSAEKA WDVSCIYHAR RHYFSRGWAP FARYNNLKQG  60
DVCIFELVNK DEMQVHVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4305901e-121AM430590.2 Vitis vinifera contig VV78X234759.34, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019074382.12e-25PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLD7TPS71e-52D7TPS7_VITVI; Uncharacterized protein
STRINGVIT_03s0063g01420.t012e-53(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-12related to vernalization1 1