PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031404001
Common NameVIT_06s0061g01240
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 354aa    MW: 38865.2 Da    PI: 4.5249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031404001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013328350223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+k+F++   L++H +  H
  GSVIVT01031404001 328 SCKSCSKTFNSENALQSHSKAkH 350
                        6*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.429327353IPR007087Zinc finger, C2H2
PROSITE patternPS000280329350IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEFWGVEVKA GESFKVKSED DKILHLSQAA LGESKKEKGN ESVPLFLKID QQKLVLGTLL  60
PANIPQLSFD LVFDKEFELS HNWKNGSVFF MGYKSVLPDE YPYHFSFFDF VLCLPIIYLF  120
CVFIYATNCI SFLFNFILRE AFSLTIFRLL IATEEFSEFD DSDSEEDLPV NAIENGKPEP  180
KVEQAKAVPT NANAGKAKVK VEEPPKDAKD EEDDDDDSDE DMVDEDSDED SDEDIMSDAE  240
DGSDEGSESE DEETPKKKVE PGKKRPTESA TKTPVPAKKA KLVSPQKTDG KKGGAHTATP  300
HPNKKAGKTP ASGDKGKGQS PKSGGQVSCK SCSKTFNSEN ALQSHSKAKH GAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.285800.0cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3784080.0FQ378408.1 Vitis vinifera clone SS0AEB13YK11.
GenBankFQ3863130.0FQ386313.1 Vitis vinifera clone SS0AEB2YG11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270966.21e-159PREDICTED: histone deacetylase HDT1
TrEMBLD7SN590.0D7SN59_VITVI; Uncharacterized protein
STRINGVIT_06s0061g01240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.27e-34histone deacetylase 3