PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01027720001 | ||||||||
Common Name | LOC100258069, VIT_05s0049g00080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 22421 Da PI: 6.6556 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.8e-05 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H GSVIVT01027720001 54 YTCSFCKREFRSAQALGGHMNVH 76 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.29E-6 | 51 | 80 | No hit | No description |
Pfam | PF13912 | 1.3E-6 | 54 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0038 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.24 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSNKLKDHSI GCRAVEDCNI SYNHNTIKDS WNCYGSGSHD EDDLGGYSWP PRSYTCSFCK 60 REFRSAQALG GHMNVHRRDR ARLRRSPPRD DQYTIPNLNL KPNPNLSTPS PPSLPTRLPA 120 FTCPLPSLAA SPFSSLSSPS SASPSELNAA QSFSGVEEFN GVNQEDECKV LKMAEFVRLD 180 LKIGLPSDLK EDLDLELRLG YS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-14 | 49 | 76 | 2 | 29 | superman protein |
2l1o_A | 4e-14 | 49 | 76 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM435357 | 0.0 | AM435357.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X117801.19, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002280772.1 | 1e-148 | PREDICTED: transcriptional regulator SUPERMAN | ||||
TrEMBL | F6H8H2 | 1e-147 | F6H8H2_VITVI; Uncharacterized protein | ||||
STRING | VIT_05s0049g00080.t01 | 1e-147 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 3e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01027720001 |
Entrez Gene | 100258069 |