PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025747001
Common NameLOC100241466, VIT_08s0040g01240
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 240aa    MW: 26492.9 Da    PI: 6.6642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025747001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-1368113454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+++ +k+L
  GSVIVT01025747001  68 NHKEAEKRRRERINSHLDKLRSLLPCS-----SKTDKASLLAKVIQRVKEL 113
                        8*************************8.....6************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.84764113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1467123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1468130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-1368116No hitNo description
PfamPF000108.8E-1168113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1270119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.2E-5152218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQPENTPEGS EFCRFLAGNV LSDVGWYGFP GNCDFPAIQS FCSSSFYPSE VSGIADVPQS  60
RALTASINHK EAEKRRRERI NSHLDKLRSL LPCSSKTDKA SLLAKVIQRV KELKEQTSEI  120
TQLETLPSET DEINVILSGD YSDDGKSIFK ASLCCEDRTE LLPELIEILK SLRLKTLKAE  180
MASLGGRIRN ILVVSGDGDH SDESVHSLRD ALKTLVDHSS SSGRSKRRRF GVDCRKVSD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.166960.0leaf
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3837960.0FQ383796.1 Vitis vinifera clone SS0ABG15YJ04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282625.11e-175PREDICTED: transcription factor bHLH106
SwissprotO806748e-72BH106_ARATH; Transcription factor bHLH106
TrEMBLD7TQR51e-173D7TQR5_VITVI; Uncharacterized protein
STRINGVIT_08s0040g01240.t011e-174(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.17e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]