PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01021625001 | ||||||||
Common Name | LOC100254822, VIT_10s0003g04670, VITISV_033098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 846aa MW: 92836 Da PI: 6.2498 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ GSVIVT01021625001 17 KYVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75 6789*****************************************************97 PP | |||||||
2 | START | 180.6 | 9e-57 | 166 | 373 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++l vi +g g++ GSVIVT01021625001 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTI 256 68999*****************************************************.8888888888*********************** PP EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 +l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ ss++Rae+lpSg+li+p+++g+s +++v+hvdl+++++++ GSVIVT01021625001 257 ELIYMQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppASSYIRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWSVPE 348 *******************************************99999999***************************************** PP HHHHHHHHHHHHHHHHHHHHTXXXX CS START 180 llrslvksglaegaktwvatlqrqc 204 +lr+l++s+ + ++kt+va+l++ + GSVIVT01021625001 349 VLRPLYESSKILAQKTTVAALRHIR 373 *********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.807 | 12 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-15 | 14 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.33E-16 | 17 | 77 | No hit | No description |
SuperFamily | SSF46689 | 1.84E-16 | 17 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.0E-16 | 17 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 19 | 75 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.79E-6 | 69 | 108 | No hit | No description |
PROSITE profile | PS50848 | 26.539 | 156 | 384 | IPR002913 | START domain |
CDD | cd08875 | 4.82E-72 | 160 | 376 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 5.6E-23 | 164 | 370 | IPR023393 | START-like domain |
SMART | SM00234 | 2.1E-54 | 165 | 375 | IPR002913 | START domain |
Pfam | PF01852 | 1.6E-54 | 166 | 373 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.59E-39 | 166 | 377 | No hit | No description |
SuperFamily | SSF55961 | 1.06E-5 | 413 | 498 | No hit | No description |
SuperFamily | SSF55961 | 1.06E-5 | 526 | 600 | No hit | No description |
Pfam | PF08670 | 7.0E-50 | 700 | 844 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MALSMHKESK QQMDSSKYVR YTPEQVEALE RVYSECPKPS SMRRQQLIRE CPILSNIEPK 60 QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYMRQQ 120 LQSASTATTD TSCESVVMSG QHQQQQNPTP QHPQRDASNP AGLLAIAEET LAEFLSKATG 180 TAVDWVQMIG MKPGPDSIGI VAVSRNCSGV AARACGLVSL EPTKVAEILK DRPSWFRDCR 240 CLDVLSVIPT GNGGTIELIY MQTYAPTTLA SARDFWTLRY TTSLEDGSLV ICERSLTSST 300 GGPTGPPASS YIRAEMLPSG YLIRPCEGGG SIIHIVDHVD LDAWSVPEVL RPLYESSKIL 360 AQKTTVAALR HIRQIAQETS GEIQYGGGRQ PAVLRTFSQR LCRGFNDAVN GFADDGWSLM 420 GSDGVEDVTI VINSSPSKFL GPQYNSTMFP TFGGGVLCAK ASMLLQNVPP ALLVRFLREH 480 RSEWADYGVD AYSAACLKAS PYEVPCARPG GFPSSQVILP LAHTVEHEEF LEVVRLEGHA 540 FSPEDVALTR DMYLLQLCSG VDENAAGACA QLVFAPIDES FADDAPLLPS GFRVIPLDPK 600 TDGPAATRTL DLASTLEVGA GGARPANESD LNNYNLRSVL TIAFQFTFEN HVRDNVAAMA 660 RQYVRSVMAS VQRVAMAIAP SRLSSHMGLK PLPGSPEALT LARWICRSYR IHTGGELLRV 720 DSQGGDAVLK LLWNHSDAIM CCSLKTNASP VFTFANQAGL DMLETTLVAL QDIMLDKILD 780 EAGRKILCSE FSKIMQQGFA YLPAGICTSS MGRPVSYEQA IAWKVLNDED SNHCLAFMFI 840 NWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.5556 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281868.2 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A438IPB2 | 0.0 | A0A438IPB2_VITVI; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A5AMZ1 | 0.0 | A5AMZ1_VITVI; Uncharacterized protein | ||||
STRING | VIT_10s0003g04670.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01021625001 |
Entrez Gene | 100254822 |
Publications ? help Back to Top | |||
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