PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019049001
Common NameVITISV_008633
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 521aa    MW: 56782.6 Da    PI: 7.2582
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019049001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.7e-15231290155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSVIVT01019049001 231 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 290
                        57*******************666664478446*************************98 PP
2AP247.25.4e-15333384155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSVIVT01019049001 333 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 384
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-22231300No hitNo description
PfamPF008478.8E-12231290IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-17231300IPR016177DNA-binding domain
SMARTSM003802.0E-29232304IPR001471AP2/ERF domain
PROSITE profilePS5103219.164232298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15232299IPR001471AP2/ERF domain
PRINTSPR003672.2E-6233244IPR001471AP2/ERF domain
CDDcd000187.96E-25333394No hitNo description
PfamPF008476.7E-10333384IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18333394IPR016177DNA-binding domain
PROSITE profilePS5103219.045334392IPR001471AP2/ERF domain
SMARTSM003801.5E-33334398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18334393IPR001471AP2/ERF domain
PRINTSPR003672.2E-6374394IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MASMNNWLGF SLSPRELPPQ PENHSQNSVS RLGFNSDEIS GTDVSGECFD LTSDSTAPSL  60
NLPPPFGILE AFNRNNQPQD WNMKGLGMNS DTNYKTTTSE LSMLMGSSCS SHHNLENQEP  120
KLENFLGCRS FADHEQKLQG CNSIAAAAYD SSADYISIGL SMIKTWLRNQ PAPTHQDNNK  180
STDTGPVGGA AAGNLPNAQT LSLSMSTGSH QTGAIETVPR KSIDTFGQRT SIYRGVTRHR  240
WTGRYEAHLW DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG TTTTTNFPIS  300
NYEKEIEEMK HMTRQEYVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL  360
YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVNS ILESSTLPIG GAAKRSGSNS  420
VIYSGGVGYG NNIGFVMPIS TVIAHEGGHG QGNGGFGDSE VKAIGYDNMF GSTDPYHARS  480
LYYLSQQSSA GMVKGSSAYD QGSGLAVCHG TPTFTVWNDT *
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019074893.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN21e-156BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA5BRJ80.0A5BRJ8_VITVI; Uncharacterized protein
STRINGPOPTR_0010s18840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-149AP2 family protein