PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01018161001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 258aa MW: 28412.7 Da PI: 9.3425 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H GSVIVT01018161001 24 HKCKLCFRSFSNGRALGGHMRSH 46 79********************9 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H GSVIVT01018161001 122 YKCETCNKVFRSYQALGGHRASH 144 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.92E-5 | 22 | 50 | No hit | No description |
SMART | SM00355 | 0.065 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.492 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.3E-6 | 24 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.18E-8 | 122 | 196 | No hit | No description |
SMART | SM00355 | 0.012 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.762 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.6E-12 | 122 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 174 | 196 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.8E-10 | 174 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 174 | 201 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MIFVYIAWWR NACHLLLLRK MEKHKCKLCF RSFSNGRALG GHMRSHMLNL PIPPKQEQPK 60 NPKKSIRLAD PEFSFAVDAA SVQKKIKLDK LSKTESWADP EPVSSISDAT TEEDVAFSRG 120 KYKCETCNKV FRSYQALGGH RASHKKIKAC APIKEVEFEP ENASNPCLAD AKIHECPVCF 180 RKFTSGQALG GHKRSHISGS AAAAAAPAPP PPPRKASSKV GDSMIDLNLP APIEEDDISQ 240 IEHSAVSDAE FVNPIRR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.2332 | 0.0 | fruit| inflorescence| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ392665 | 0.0 | FQ392665.1 Vitis vinifera clone SS0AFA4YL24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278670.1 | 1e-134 | PREDICTED: zinc finger protein ZAT4 | ||||
Swissprot | Q9SHD0 | 2e-52 | ZAT4_ARATH; Zinc finger protein ZAT4 | ||||
TrEMBL | F6GV56 | 1e-133 | F6GV56_VITVI; Uncharacterized protein | ||||
STRING | VIT_15s0021g02720.t01 | 1e-134 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 5e-52 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01018161001 |