PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01017242001 | ||||||||
Common Name | VIT_09s0002g06020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | CPP | ||||||||
Protein Properties | Length: 327aa MW: 35792.7 Da PI: 7.1982 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.8 | 1.4e-15 | 13 | 53 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+++Clk+YC+C aag++C+++C C++C Nk+e+ GSVIVT01017242001 13 DRKHCNCKRTQCLKLYCDCLAAGVYCTDSCACSNCLNKSEN 53 689***********************************985 PP | |||||||
2 | TCR | 31.5 | 3.5e-10 | 101 | 122 | 1 | 22 |
TCR 1 kekkgCnCkkskClkkYCeCfa 22 ++k+gCnCkks C+kkYCeC++ GSVIVT01017242001 101 RHKRGCNCKKSMCQKKYCECYQ 122 589******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.5E-15 | 12 | 53 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 25.955 | 13 | 143 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.2E-11 | 15 | 50 | IPR005172 | CRC domain |
SMART | SM01114 | 9.6E-4 | 101 | 131 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-5 | 103 | 122 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MSRKTATHTT ESDRKHCNCK RTQCLKLYCD CLAAGVYCTD SCACSNCLNK SENEGVVQII 60 REKIESRDPL AFAPRIVNPD TDTTDNVLQE DGNWTTPSSA RHKRGCNCKK SMCQKKYCEC 120 YQVYISVDLN RRAERWGVQS HGELNMGGAD QFSPEWEGIT DINQITPLSH PHSGAGASSA 180 SPNPRDFPEV LHAELYRGNN SQTSAGALHW SSSSNTLVPL RHGNEAPQEL SSDSAQHALT 240 KDDDTPKILS SSPNGPMQAC SSNQKCVSPP QIQLKDTSLR PSPSLTNEQT IIRLGTPSVR 300 PFSWCSNSKD GIPQIKSHPN DSTSNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-11 | 14 | 125 | 11 | 107 | Protein lin-54 homolog |
5fd3_B | 2e-11 | 14 | 125 | 11 | 107 | Protein lin-54 homolog |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM474506 | 0.0 | AM474506.1 Vitis vinifera contig VV78X239862.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010654746.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | D7U0W4 | 0.0 | D7U0W4_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0002g06020.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-39 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01017242001 |