PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01014689001 | ||||||||
Common Name | LOC100256650, VIT_19s0015g00580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NF-YB | ||||||||
Protein Properties | Length: 210aa MW: 23393.1 Da PI: 6.2487 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 155.5 | 9.2e-49 | 48 | 140 | 5 | 97 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++++Pian++r+m++vlPa+akis+daketvqecvsefisf+tsea+d+c++e rkti+++d++ a+++lGf+dy++pl++yl++yre e+e GSVIVT01014689001 48 EQYMPIANLTRVMRRVLPAHAKISDDAKETVQECVSEFISFITSEANDRCHHELRKTITAEDVIAAMSKLGFDDYIDPLTLYLHRYRESENE 139 789**************************************************************************************998 PP NF-YB 97 k 97 + GSVIVT01014689001 140 R 140 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-44 | 48 | 142 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.86E-35 | 49 | 144 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-23 | 50 | 114 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.7E-15 | 78 | 96 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 81 | 97 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.7E-15 | 97 | 115 | No hit | No description |
PRINTS | PR00615 | 4.7E-15 | 116 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009010 | anatomy | seed | ||||
PO:0025501 | developmental stage | fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MERDDDQFHG YRRKIPENSS TSALNPGATS SNPIETTAGV GQKQLPMEQY MPIANLTRVM 60 RRVLPAHAKI SDDAKETVQE CVSEFISFIT SEANDRCHHE LRKTITAEDV IAAMSKLGFD 120 DYIDPLTLYL HRYRESENER DRMPLRRGRE YGSLGAAANY GPPPPPWTTL HIGSQQGLYD 180 AAPIVTRDYF KEGSSAGGST SSRLPPEYK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-49 | 48 | 135 | 10 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed primarily during seed development. {ECO:0000269|PubMed:12509518}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and developing siliques. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM483768 | 0.0 | AM483768.2 Vitis vinifera contig VV78X049591.24, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002265882.1 | 1e-156 | PREDICTED: nuclear transcription factor Y subunit B-1 | ||||
Swissprot | Q84W66 | 1e-50 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A438ER33 | 1e-155 | A0A438ER33_VITVI; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | D7UAH8 | 1e-155 | D7UAH8_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0015g00580.t01 | 1e-156 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 4e-53 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01014689001 |
Entrez Gene | 100256650 |