PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01014589001 | ||||||||
Common Name | LOC100258884, VIT_19s0014g05100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 25960.4 Da PI: 8.1891 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 80 | 127 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +K++iL Av+ + +L GSVIVT01014589001 80 SKACREKLRRDRLNDKFMELGSILEPG---RPPKTDKSSILIDAVRMVTQL 127 6789**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.76 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.88E-7 | 79 | 132 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 80 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-9 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-13 | 81 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-8 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 2.9E-4 | 142 | 176 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVSPEATNWL YEYGLIEDIP VPDSNFANTN SGFAWTPVQA LNTSANVSGE IDGSFGDSDG 60 IKETGSKKRV RSESCGASSS KACREKLRRD RLNDKFMELG SILEPGRPPK TDKSSILIDA 120 VRMVTQLRGE SQKLKDSNSS LQEKIKELKA EKNELRDEKQ RLKAEKEKLE QQLKAMNAQP 180 SFLPPVPSIP AAFAAQGQAG GNKLVPFIGY PGVAMWQFMP PAAVDTSQDH VLRPPVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1904 | 0.0 | bud| cell culture| flower| fruit| inflorescence| leaf| pedicel| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ394256 | 0.0 | FQ394256.1 Vitis vinifera clone SS0AFA21YM14. | |||
GenBank | FQ395632 | 0.0 | FQ395632.1 Vitis vinifera clone SS0AFA14YO06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282727.1 | 1e-175 | PREDICTED: transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-114 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A438IDC2 | 1e-174 | A0A438IDC2_VITVI; Transcription factor ILR3 | ||||
TrEMBL | E0CT50 | 1e-174 | E0CT50_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0014g05100.t01 | 1e-174 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-93 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01014589001 |
Entrez Gene | 100258884 |