PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011960001
Common NameLOC100250878, VIT_01s0011g02940
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 317aa    MW: 34659 Da    PI: 6.9655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011960001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14128174354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  GSVIVT01011960001 128 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 174
                        79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-12128174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-15129192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-14129181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-5138177No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-4210268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MQQQNNDAYG GGGGRSGLIF PEVSPILQPW SFPPVHAFNP AHFAANPVRD HDPFLVPPPP  60
SAYGSVFNRR APALQFAYEG PSSEHLRIIS DTLGPVVQPG SSPFGLQAEL GKMTAQEIMD  120
AKALAASKSH SEAERRRRER INNHLAKLRS LLPSTTKTDK ASLLAEVIQH VKELKRQTSL  180
IAESSPVPTE MDELTVDTSD EDGKFVIKAS LCCEDRTDLL PDLIKTLKAL RLRTLKAEIT  240
TLGGRVKNVL FITGEEDSSS SGENQQQQQQ QQQQYSISSI QEALKAVMEK TGGDESSSGS  300
VKRQRTNINI IEHRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4742510.0AM474251.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X031409.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278697.10.0PREDICTED: transcription factor bHLH30 isoform X1
RefseqXP_010647981.10.0PREDICTED: transcription factor bHLH30 isoform X1
SwissprotQ9S7Y11e-106BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A438ECZ40.0A0A438ECZ4_VITVI; Transcription factor bHLH30
TrEMBLF6HF160.0F6HF16_VITVI; Uncharacterized protein
STRINGVIT_01s0011g02940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.18e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]