PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010794001
Common NameLOC100257595, VIT_05s0102g00750
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family DBB
Protein Properties Length: 240aa    MW: 26443.9 Da    PI: 4.6135
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010794001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-07444539
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        C+ +e+ +++  C  ++  lC++C +e H        H++
  GSVIVT01010794001  4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44
                       7*****************************65667777765 PP
2zf-B_box28.33.7e-095394237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       + + C+ ++ek + +fC +++ l+C+dC + +H+       H
  GSVIVT01010794001 53 KLPPCDICQEKAAFIFCVEDRALFCRDCDEPIHSAgnlaanH 94
                       6789*****************************656666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.314147IPR000315B-box-type zinc finger
CDDcd000214.91E-7347No hitNo description
PfamPF006431.6E-5444IPR000315B-box-type zinc finger
SMARTSM003368.7E-10447IPR000315B-box-type zinc finger
SMARTSM003366.9E-155299IPR000315B-box-type zinc finger
PROSITE profilePS501199.0725299IPR000315B-box-type zinc finger
PfamPF006431.8E-75395IPR000315B-box-type zinc finger
CDDcd000215.21E-85598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPPCDIC  60
QEKAAFIFCV EDRALFCRDC DEPIHSAGNL AANHQRFLAT GIRVALSSKC AKETDKSSSE  120
PPPNQNSQQI TMKMPPQQAP NFTSSSWAVD DLLQFSDFES SDKNKQLEFG ELEWLTEMGI  180
FGDQVPQEAM AAAEVPQLPI SQPSYGASYR ATKSSMPYKR PRIEILDDED EHFTVPDLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.68810.0bud| flower| fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3943980.0FQ394398.1 Vitis vinifera clone SS0AFA20YP24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268700.11e-178PREDICTED: B-box zinc finger protein 25
SwissprotQ9SID11e-101BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A438I5F01e-177A0A438I5F0_VITVI; B-box zinc finger protein 25
TrEMBLD7U1S61e-177D7U1S6_VITVI; Uncharacterized protein
STRINGVIT_05s0102g00750.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53971020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.11e-100salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]