PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010280001
Common NameLOC100240845, VIT_01s0010g02070
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 509aa    MW: 55767.9 Da    PI: 6.37
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010280001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000764054391655
                        HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        i +++  L++++ +      +K + a++L +A+ YIk Lq
  GSVIVT01010280001 405 IGDRITALQQIVSPF-----GKTDTASVLYEAIGYIKFLQ 439
                        678999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.769389438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.70E-4404443No hitNo description
Gene3DG3DSA:4.10.280.109.8E-9404447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-10404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MAEECTDSSV ATSSSAPNWW DLHGSSTLSS CYNSTNPWSQ PNPNSNSSCE EEVSISTSFT  60
NASNHSGLTV ESSRRLIEPA SSTNELIGEP AASDSHLWSH VLLNVGSNGD LHGSQDVGEN  120
LLDALSSKSL STGIFEPACD YLKKMDNSWE FTNSTSFSNF DKHFNGFSEN FIGSERLTKL  180
SDLVSNWSIA PPDPEVNHQF DPQICNMSLS SPMDIQYSQP DLCHMKLTFN ESASCGMGAS  240
RNSGLLSCYR HDQKVENDHH EIGSSPGPLL RRPCQSNGIG YQFGLNGSIV GDNGKYYYGI  300
PNTTCSNPRN FADVISFSSR LCKPLVDSRE SKPCLKPLSL SDCKKQGLQT SSQARNNARG  360
QGISNEGKKK RSDQDTSEAQ TVMKKPKQES SAVSSVKMQA PKVKIGDRIT ALQQIVSPFG  420
KTDTASVLYE AIGYIKFLQE QVQLLSNPYM KTNKDPWGGL DRKDKGDLKL DLKSRGLCLV  480
PISCTPQVYH ENTGSDYWPT TYRGCLYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4257250.0AM425725.2 Vitis vinifera contig VV78X207905.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268359.20.0PREDICTED: transcription factor bHLH111
TrEMBLD7TAI80.0D7TAI8_VITVI; Uncharacterized protein
STRINGVIT_01s0010g02070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP962056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.11e-53bHLH family protein