PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01007165001 | ||||||||
Common Name | LOC100853530, VIT_00s0494g00010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GRF | ||||||||
Protein Properties | Length: 558aa MW: 60377.9 Da PI: 6.2463 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.7 | 2.3e-24 | 235 | 279 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e GSVIVT01007165001 235 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 279 79****************************************985 PP | |||||||
2 | QLQ | 59.2 | 1.2e-20 | 165 | 201 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ an+PvP++Ll +i+k GSVIVT01007165001 165 GPFTPSQWIELEHQALIYKYITANVPVPSNLLIPIRK 201 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.7E-11 | 165 | 201 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.0E-14 | 166 | 200 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.2 | 166 | 201 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.287 | 235 | 279 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.0E-21 | 236 | 278 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MDKFVEACPR WMDFGLVGLE GLVGPEDVAP SQVAETETKQ MGLGSGLGKQ EISGSLQDDW 60 ADSKMARTDD FGASITMSLQ HGTSLLRSNS LLSDDGGAQQ HMLSFSSPKS EMSFLGKDGR 120 LVDRGAKTTA FPYYQPTPSA YNRNAGFGSG SLNTSMHGAF AGVRGPFTPS QWIELEHQAL 180 IYKYITANVP VPSNLLIPIR KSLNPFGLSG SSSTSLAHNS LSWGSFHLGF SGNTDPEPGR 240 CRRTDGKKWR CSRDAVADQK YCERHINRGR HRSRKPVEGQ TGHAVSGPTN SKVVPMPSTM 300 SASVMSSGGA SNSLAIAQNQ FKSLQPVAAN PSADTLVNRL QEPQGLSMIS PTVDLKSRDT 360 PFSISKLPIP FEESPQSEFG FVSSDSLLNP SERGSYMNSR NYTPFLDFSD QETQDQHPFR 420 QFIDDWPKDQ SNRSDIAWPE ELKSDWTQLS ISIPMSSSDF SSSSSSPTQE KLAFSPLRLS 480 RELDPNSSAL NLMTEGWDGS PQIGSSPTGV LQKATFGSLS NSSSGSSPTT ENKKIHERAS 540 HCEDMLGSTL ATSSSIPS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM488616 | 0.0 | AM488616.1 Vitis vinifera contig VV78X030262.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003635376.1 | 0.0 | PREDICTED: growth-regulating factor 1 | ||||
Swissprot | O81001 | 1e-109 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | F6HRI9 | 0.0 | F6HRI9_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s0494g00010.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3357 | 12 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-92 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01007165001 |
Entrez Gene | 100853530 |
Publications ? help Back to Top | |||
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