PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01004847001
Common NameVIT_07s0141g00020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 384aa    MW: 42520.6 Da    PI: 6.6075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01004847001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07169190223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C +Cgk F+r  nL+ H+r H
  GSVIVT01004847001 169 FCDICGKGFKRDANLRMHMRAH 190
                        6*******************99 PP
2zf-C2H211.90.0007253276123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        y+C+ C+ ksFs   +L++H++ +
  GSVIVT01004847001 253 YSCNRCNkKSFSVLADLRSHLKHC 276
                        99*******************977 PP
3zf-C2H211.70.00079285300621
                        TTEEESSHHHHHHHHH CS
            zf-C2H2   6 CgksFsrksnLkrHir 21 
                        Cg+sFsrk+ L  H+ 
  GSVIVT01004847001 285 CGTSFSRKDKLFGHMA 300
                        **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.34E-6165191No hitNo description
PROSITE profilePS5015711.905168195IPR007087Zinc finger, C2H2
SMARTSM003550.0017168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-6170208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035534215248IPR015880Zinc finger, C2H2-like
SMARTSM0035514253275IPR015880Zinc finger, C2H2-like
SMARTSM00355230281305IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MPCIYLLSPA YCFYMDRILK SPAFSILMSN SGRFFGQAPK FPFVGDITRQ EGTDTRVPLL  60
NLATVQIRVD SLERFLSDSI SRSVVIGPDQ MEMVSTEIVS AIHQIIVNGA ALLSCSQPEY  120
SSFPAAGAAV LPEGYAVMGN EEIDGGNDDG DCEVIELDAV ELLAEHIHFC DICGKGFKRD  180
ANLRMHMRAH GNQFKTPEAL AKPDKCMETQ RRVRFSCPYQ GCNRNKGHKK FRALKSVICV  240
KNHFKRSHCP KMYSCNRCNK KSFSVLADLR SHLKHCGESK WRCSCGTSFS RKDKLFGHMA  300
LFEGHMPAVE NGDEKSVLSA AAVAAATMEE DEHEDEDGIG KEEENGMFEG LFQGFGSIGE  360
YCLQDVLSCS FICNKVFGLN IHC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.5860.0bud| cell culture| flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4862400.0AM486240.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X205200.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267529.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N52e-75STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLF6HWM40.0F6HWM4_VITVI; Uncharacterized protein
STRINGVIT_07s0141g00020.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.22e-74C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]