PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01002536001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | AP2 | ||||||||
Protein Properties | Length: 476aa MW: 52335.9 Da PI: 7.4461 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.9 | 7.7e-16 | 355 | 406 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g GSVIVT01002536001 355 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 406 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.99E-15 | 209 | 322 | No hit | No description |
PROSITE profile | PS51032 | 15.962 | 210 | 320 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-19 | 210 | 326 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-12 | 210 | 232 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 211 | 222 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-12 | 284 | 321 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-9 | 288 | 322 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.1E-6 | 302 | 322 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-10 | 355 | 406 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.60E-11 | 355 | 414 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 355 | 415 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-31 | 356 | 420 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.151 | 356 | 414 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-18 | 356 | 414 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MKPLSAPQSN PNSHTLTRLF AGWTNPKPQV MYTEGDDYQV KEAATPSITN SSMLTSFVDP 60 QLHHQQVPKL EDFLGGDSSS LVRYSESQTE TQDSSLTHIY DHGSAYFNEQ QDLKAIAATA 120 GFQAFSTNSG SEVEDSSSIG RTQLASSDFP GHSIESGNEL AFSHCPTGAL SLGVTTTTTT 180 TQRSDQQAIV SADSECSKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN SSRREGQARK 240 GRQATQTCLR MGFSTLYFSH ILRKGINYLP GDESDKNHVA YGSFLFALYL GGYDKEEKAA 300 RAYDLAALKY WGASATTNFP VSNYTKELEE MKHVTKQEFI ASLRRKSSGF SRGASIYRGV 360 TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDIA AIKFRGVNAV TNFEMNRYDV 420 EAIANSALPI GGAAKRLKLS LESDQKPCLN LDQQTQSSAS SSGITFGAIQ PIPAIP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.4902 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM459776 | 0.0 | AM459776.1 Vitis vinifera, whole genome shotgun sequence, contig VV79X002248.2, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003635541.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 1e-165 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A438KQZ7 | 0.0 | A0A438KQZ7_VITVI; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | F6HRZ0 | 0.0 | F6HRZ0_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s1291g00010.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.3 | 1e-168 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01002536001 |
Publications ? help Back to Top | |||
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