PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP19870_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YB

Protein Properties

Length: 201aa MW: 21038.4 Da PI: 8.4796

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP19870_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	182.1	4.6e-57	24	119	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 reqdrflPianv+rimkk+lPanakiskdaketvqecvsefisf+t+eas+kcqrekrkt+ngddl+wa++tlGfedyv+ GSMUA_AchrUn_randomP19870_001 24 REQDRFLPIANVGRIMKKALPANAKISKDAKETVQECVSEFISFITGEASEKCQREKRKTVNGDDLIWAMTTLGFEDYVQ 103 89**************************************************************************** PP NF-YB 82 plkvylkkyrelegek 97 plkvyl+k+relegek GSMUA_AchrUn_randomP19870_001 104 PLKVYLQKFRELEGEK 119 ***********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-52	21	127	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-39	26	120	IPR009072	Histone-fold
Pfam	PF00808	4.0E-28	29	93	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.7E-20	57	75	No hit	No description
PROSITE pattern	PS00685	0	60	76	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.7E-20	76	94	No hit	No description
PRINTS	PR00615	3.7E-20	95	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MVDSDNESGG QNHAAGRGEL CSPREQDRFL PIANVGRIMK KALPANAKIS KDAKETVQEC 60 VSEFISFITG EASEKCQREK RKTVNGDDLI WAMTTLGFED YVQPLKVYLQ KFRELEGEKL 120 VSSGFHKDSG GSGGSTGGIG SIDRGFSAGG SSSVGAYGSA GGMMMAMRQP LHGPSYGHQV 180 GKASSGGRGS SSSSAGIGRH G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-48	24	114	2	92	Transcription factor HapC (Eurofung)
4g92_B	4e-48	24	114	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956383	2e-89	EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387674.1	1e-145	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	Q75IZ7	2e-71	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	M0UAP6	1e-144	M0UAP6_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP19870_001	1e-145	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-70	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]