PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP04160_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 25276.5 Da PI: 12.2224 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H+r+H GSMUA_AchrUn_randomP04160_001 4 HRCKLCHRRFSNGRALGGHMRSH 26 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.3E-5 | 3 | 30 | No hit | No description |
Pfam | PF13912 | 5.4E-8 | 3 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.198 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MERHRCKLCH RRFSNGRALG GHMRSHVAPA PRPMKAQQHL PSPCASSSSF PAADEDSVAP 60 ATTYGLREKS RRRSGLVDPD DTESSFRRRL TRPRRREDPS ADAEPLSSVS DASPDEDVAR 120 CLMLLSRDAW RRSRRPPLDR GGRGRGTSAV RARNTSDRIK LSAATARATR GYSSAHTATG 180 SSPPARLSAG TKDPIFPPPP LLALRRSRSR CRRRRHRRTI PSRSTTVS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX620375 | 5e-47 | JX620375.1 Gossypium hirsutum clone NBRI_GE66602 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385850.1 | 3e-73 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | M0U678 | 1e-155 | M0U678_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP04160_001 | 1e-156 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16610.1 | 8e-16 | C2H2-like zinc finger protein |