PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP03030_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 369aa    MW: 40415.1 Da    PI: 8.7062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP03030_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046426123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                   ++C  C ++Fs    L  H+r+H
  GSMUA_AchrUn_randomP03030_001  4 HRCRFCRRRFSGGRALADHMRSH 26
                                   79********************9 PP
2zf-C2H212.80.00036193215123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                    + Cp+C ++Fs+   L  H r+H
  GSMUA_AchrUn_randomP03030_001 193 FDCPYCYRVFSSGQALGGHKRSH 215
                                    77******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.03E-7426No hitNo description
PROSITE profilePS501579.785431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.03E-7141168No hitNo description
PfamPF139123.2E-9145170IPR007087Zinc finger, C2H2
SMARTSM003550.15146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39146168IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889193220IPR007087Zinc finger, C2H2
PfamPF139121.1E-11193217IPR007087Zinc finger, C2H2
SMARTSM003550.48193215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVRHRCRFCR RRFSGGRALA DHMRSHVTSA SKMARQAFPS PFRLADSEFS TPGAAAEGVA  60
GGSYSVVQDG ESDAESSFRR RFGRPRLQED AFADARPVSS ISNTSTEEDV ARCLMLLSRD  120
ARPKSEARGH QSNGCVEANG DQKTRYQCST CRKFFRSYQA LGGHRASHKR VGLECITTAD  180
ADADAADREP MLFDCPYCYR VFSSGQALGG HKRSHLSSAI DVATKVPALL PPPQLSALAI  240
NDDFIDLNVP APLEEEPDHS ALSVATEFAS NSGRACMVLF RMSRDDGRTM VSSHLSRISR  300
HAKPVYDRPS YSSIKAHDRH PTQGEVKTNQ TTTDLLVRGA KVDNHPTRAI LAGKQLPSSH  360
EHSDLGVVN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385743.11e-154PREDICTED: zinc finger protein ZAT1-like
TrEMBLM0U5W50.0M0U5W5_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP03030_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-31C2H2-like zinc finger protein