PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP00460_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24441.8 Da PI: 5.6992 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.8 | 1.2e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG 75 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG GSMUA_AchrUn_randomP00460_001 4 SCNGCRVLRKGCSDDCSIRPCLewirnPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYG 83 6******************************************************************************* PP DUF260 76 avgvilklqqqleqlkaelallke 99 +vg+++++++ql+q++ e +l ++ GSMUA_AchrUn_randomP00460_001 84 SVGLLWSGSWQLCQAAMESVLKGS 107 ****************99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.813 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-25 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDDCS IRPCLEWIRN PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAM ESVLKGSPIV QIPSEAAAAT 120 PVPPLKAYDI RHVAKDAELH KPNAGGSGGD GDGRENESVF SADAASHVSQ GELSPAEEGE 180 VGLELTLGLE PWLRPDRAIR PAGDSRCDVS RLNADTCKVD LCLQLPVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385423.1 | 1e-150 | PREDICTED: LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 1e-82 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | M0U558 | 1e-166 | M0U558_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP00460_001 | 1e-166 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-82 | LOB domain-containing protein 41 |