PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P19110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 393aa    MW: 43109.2 Da    PI: 6.5161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P19110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.52.4e-18108157255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r +h++ E+rRR +iN++f+ Lr+l+P++    ++K +Ka+ L +++eYIk Lq
  GSMUA_Achr9P19110_001 108 RSKHSATEQRRRCKINDRFQILRDLIPHS----DQKRDKASFLLEVIEYIKFLQ 157
                            889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-18104166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-22106177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.92106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-16108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-17108161No hitNo description
SMARTSM003534.1E-14112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MPVCSCPPFW FFFFPFLFSC SGEKLETWVR VKFRLGFPSI SSSLLNLRVA SGAGEPGRGK  60
RLMESVSRSS GDEDEMGRAQ ESSRRVELTV KVDGKSSEQK PGTPTTPRSK HSATEQRRRC  120
KINDRFQILR DLIPHSDQKR DKASFLLEVI EYIKFLQEKV QKYESFPGWN QENEKLMPWS  180
SNQGPGDGMV DPPNLTKNGS QSGHLFSGKF VDSSIPGAPM SLSNAHNVAE ADMSPGAVLV  240
PMQSNYYASV GRGSGFMQPQ ERVISDSDNP VSQSQSEWQS SSCMADCNLS SDMLNEHEEL  300
IIDEGTISIS SVYSQGLLTA LSQAMASSGV DLSQASISVQ INLGKGASKR PTTANMSNAK  360
DHSDNSHIHQ IMGNSVPGSN IEESEQVPKR QKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6298000.0HM629800.1 Musa acuminata AAA Group bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418108.10.0PREDICTED: transcription factor BIM2
TrEMBLM0U1L80.0M0U1L8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P19110_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-60BES1-interacting Myc-like protein 2