PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P00790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YB
Protein Properties Length: 173aa    MW: 19239 Da    PI: 4.6352
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P00790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB70.72.5e-221193385
                  NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                           ++d  lP + + +i+k++lP + ++++d+++++ ec +efi +v+se+++ c+re++kti+++ +l al  lGf +y+e++ +
  GSMUA_Achr9P00790_001 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDTQDLLVECCVEFINLVSSESNEVCNREDKKTIAPEHVLKALEVLGFGEYIEEVYA 93
                           67999*************************************************************************99754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-378139IPR009072Histone-fold
SuperFamilySSF471131.29E-3412139IPR009072Histone-fold
PfamPF008082.5E-191579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDTQ DLLVECCVEF INLVSSESNE  60
VCNREDKKTI APEHVLKALE VLGFGEYIEE VYAAYEHHKL ETLDSPKGGK FGGIEMTEEE  120
ALAEQQRMFA EARARMNNGS TGVSLSLISC VLHSPQVCSF PIDIFANHSG AKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B7e-351213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415812.18e-99PREDICTED: protein Dr1 homolog isoform X2
SwissprotP495926e-80NC2B_ARATH; Protein Dr1 homolog
TrEMBLM0TWD61e-125M0TWD6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P00790_0011e-125(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.44e-84nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]