PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P26510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 338aa    MW: 37305.4 Da    PI: 8.3137
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P26510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11.1e-133493155
                    AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                           s+y+GV++++++gr++A+++d  ++  g  ++ k+  l  ++ +e+Aa+a++ a++k++g
  GSMUA_Achr8P26510_001 34 SQYRGVTRHRWTGRYEAHLWDnTCKqEGqtRKgKQGELRGYDMEEKAARAYDLAALKYWG 93
                           78*******************988886678446*************************98 PP
2AP246.96.7e-15138187355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_Achr8P26510_001 138 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 187
                            9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1434102IPR016177DNA-binding domain
PfamPF008475.0E-103493IPR001471AP2/ERF domain
CDDcd000184.08E-1734101No hitNo description
Gene3DG3DSA:3.30.730.101.7E-1235102IPR001471AP2/ERF domain
PROSITE profilePS5103217.21435101IPR001471AP2/ERF domain
SMARTSM003801.0E-2135107IPR001471AP2/ERF domain
PRINTSPR003671.6E-63647IPR001471AP2/ERF domain
CDDcd000181.08E-23136197No hitNo description
SuperFamilySSF541717.85E-18136196IPR016177DNA-binding domain
PROSITE profilePS5103219.177137195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-18137195IPR001471AP2/ERF domain
SMARTSM003801.2E-33137201IPR001471AP2/ERF domain
PfamPF008471.1E-9138187IPR001471AP2/ERF domain
PRINTSPR003671.6E-6177197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSPGSQSSCI TAPLHIATAA PTEKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNTCKQE  60
GQTRKGKQGE LRGYDMEEKA ARAYDLAALK YWGPSTHINF PLESYQEELE EMKNMTRQEY  120
VAHLRRNSTG FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI  180
AAIKFRGVNA VTNFDITRYD VDKIMASSTL LSGELARRTK VNDAGKEPTP EQSGCKDLVE  240
ENSSSGSGWK MDFRSAQQAP PSSESHDPKS LGGASTMATV GCSPEEGHHD GTGFSLMYGK  300
ASPKFTGSTT ISSWVPPAQL RPTISMSQMP VFAAWGDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415314.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-138CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLM0TTV40.0M0TTV4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P26510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-124AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]