PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr8P22800_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 265aa MW: 29797.7 Da PI: 9.4177 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.7e-18 | 101 | 155 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F+++++++ +++ L+++l+L rqV vWFqNrRa+ k GSMUA_Achr8P22800_001 101 RKKLRLSKEQSDSLEESFKEHSTLNPKQKLALSEQLNLRPRQVEVWFQNRRARTK 155 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.8 | 6.2e-38 | 101 | 190 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlskeq+ +LEesF+e+++L+p++K +l+++L+l+prqv+vWFqnrRARtk+kq+E+ +e+L r++++l+een+rL+k+v+eLr GSMUA_Achr8P22800_001 101 RKKLRLSKEQSDSLEESFKEHSTLNPKQKLALSEQLNLRPRQVEVWFQNRRARTKLKQTEVHCEYLNRCCQTLMEENRRLQKKVAELR 188 69*************************************************************************************9 PP HD-ZIP_I/II 89 eel 91 +l GSMUA_Achr8P22800_001 189 -AL 190 .55 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.42E-17 | 93 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.487 | 97 | 157 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-13 | 99 | 161 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-15 | 101 | 155 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-17 | 101 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.00E-15 | 101 | 158 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 132 | 155 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.0E-7 | 157 | 190 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.6E-17 | 157 | 200 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence Send to blast |
MTKERNKSLQ PKEGDMNLGR DARTYLEANV ECSDSPVSNF VVVTAILPGG RGCGTTKGLL 60 TDHWVRWRER ERERERADKM WVGVVQASSR VSDEEENGLV RKKLRLSKEQ SDSLEESFKE 120 HSTLNPKQKL ALSEQLNLRP RQVEVWFQNR RARTKLKQTE VHCEYLNRCC QTLMEENRRL 180 QKKVAELRAL QTSCHDFSMH LPATTLSMCP SCERVAPTPT SNSASAAAAS DHQPNSFSAL 240 IPKPRPSSLA VQPAPAASRQ SSPAS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 65 | 75 | RWRERERERER |
2 | 149 | 157 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009414099.1 | 1e-125 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | A2Z1U1 | 5e-70 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 1e-69 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | M0TST3 | 0.0 | M0TST3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P22800_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-64 | homeobox from Arabidopsis thaliana |