PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P15860_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 364aa MW: 38836.7 Da PI: 7.0117

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P15860_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	63	123	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ GSMUA_Achr8P15860_001 63 PQAALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRAK 123 57889*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	64	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-33	66	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MVGERPMTAA KSCNSITTTT TITNNNNGSS TITNTNNNDM VHVNSTTPGA ARVMDKPSAQ 60 DHPQAALRCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK 120 RAKKPAAAPM VPPGNPHPRP LFPPDPIACL SAQRSSSSQL DAAAIYALQA AASSSDMSLT 180 LPIIANSIHF PSCASAFDLQ PHLGALGLGL SSDPLLENEY HLGELQPLAP MSSAAISLLN 240 DYPIFGSSLS SASLLVSGIK RPKQVEDHQV LLPLDELQTS GGMSESINGM MKEVKLEGQT 300 NHMVNDNINS CIDWQIPPEN SLDDYGPAAA VYWNAAISGG AGWPDGTNCG WVVGHASDLV 360 RMDN

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MVGERPMTAA KSCNSITTTT TITNNNNGSS TITNTNNNDM VHVNSTTPGA ARVMDKPSAQ  60
DHPQAALRCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK  120
RAKKPAAAPM VPPGNPHPRP LFPPDPIACL SAQRSSSSQL DAAAIYALQA AASSSDMSLT  180
LPIIANSIHF PSCASAFDLQ PHLGALGLGL SSDPLLENEY HLGELQPLAP MSSAAISLLN  240
DYPIFGSSLS SASLLVSGIK RPKQVEDHQV LLPLDELQTS GGMSESINGM MKEVKLEGQT  300
NHMVNDNINS CIDWQIPPEN SLDDYGPAAA VYWNAAISGG AGWPDGTNCG WVVGHASDLV  360
RMDN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003815	8e-41	AP003815.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1163_G04.
GenBank	AP014963	8e-41	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	8e-41	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413370.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	M0TQT9	0.0	M0TQT9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P15860_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	7e-32	TARGET OF MONOPTEROS 6