PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P10490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CAMTA
Protein Properties Length: 838aa    MW: 95500.5 Da    PI: 7.8981
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P10490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1161.91.1e-5031173117
                   CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                            + ++rw +++e++aiL n++ ++++ ++ ++p sg+++L++rk++r+frkDGy+wkkkkdgktv+E+hekLK+g+ e +++yYa+se+
  GSMUA_Achr8P10490_001   3 DASSRWFRPNEVYAILSNYTLFKIQPQPIDNPASGRVLLFDRKMLRNFRKDGYNWKKKKDGKTVQEAHEKLKIGNEERIHVYYARSED 90 
                            4589************************************************************************************ PP

                   CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                            +p+f rrcywlL+++le+ivlvhy+++
  GSMUA_Achr8P10490_001  91 DPNFYRRCYWLLDRDLERIVLVHYRQT 117
                            ************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010764.5E-621118IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143769.5891123IPR005559CG-1 DNA-binding domain
PfamPF038592.7E-454116IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.52E-9286373IPR014756Immunoglobulin E-set
SuperFamilySSF484035.44E-16468594IPR020683Ankyrin repeat-containing domain
CDDcd002047.57E-15480588No hitNo description
Gene3DG3DSA:1.25.40.203.0E-16482594IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.131496600IPR020683Ankyrin repeat-containing domain
PfamPF127968.2E-7502594IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.087529561IPR002110Ankyrin repeat
SMARTSM002481.4E-4529558IPR002110Ankyrin repeat
SMARTSM00248280568597IPR002110Ankyrin repeat
SuperFamilySSF525403.19E-6683742IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.79692714IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242693722IPR000048IQ motif, EF-hand binding site
PfamPF006127.5E-4695713IPR000048IQ motif, EF-hand binding site
SMARTSM000154.9E-5715737IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.823716740IPR000048IQ motif, EF-hand binding site
PfamPF006128.7E-5717737IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7796818IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.231798826IPR000048IQ motif, EF-hand binding site
PfamPF006120.11799818IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MEDASSRWFR PNEVYAILSN YTLFKIQPQP IDNPASGRVL LFDRKMLRNF RKDGYNWKKK  60
KDGKTVQEAH EKLKIGNEER IHVYYARSED DPNFYRRCYW LLDRDLERIV LVHYRQTSEV  120
SSFRRALFEF YETTLFSYLA GSGNCIELQN HELSLHEINT LEWEELVGST ANNNAPIVSL  180
GLSNVTSGND HGRVDQLKDQ EITLVPFKTG NPNPPVAEFN LDVAVCSENA NIYNADVLLT  240
QNSFGSWNCI NDDSLGLIDD TQLQPKSLTG DEASPIATSL GDHIFNVTDI SPCWSYCTEN  300
TMVLIVGYFG ESKKHLISSN IYYVLGEICA KAEMVHPGVY RCMAFPQPPG LVDLFLTLDG  360
HTPISQVLSF DYRLLPNTQM DGPVTSSEDN YNKLKWEDYQ VQKRLAYLLF TTSNNMSILS  420
SRIPPKSLNE AKRFASLTSP LVEKDWINLL KLDSADGVSS ASTRDDLLEV VLRNKFQEWL  480
LLKVAEGCKT TDHDSQGQGV IHLCTILNYT WAIRLYLLSG LSLDFRDIHG WTALHWAASL  540
GRHYLLDALL SAGANPSLVT DPTTESPGGW TAADLASKQG YEGLAAYLAE KGLSAHFEAM  600
SLSGNITTQG RSISVTIDNS ENLSEPELCL KESLAAYRNA ADAADRIQSA MRERALKFQT  660
KAVQLVKPEM EATQIIAALK IQHAFHNYNR RKLMKAAARI QSHFRTWKTR RDYINMRRKA  720
IKIQATFRGH QVRKQYRKIV WSVGVLEKAV LRWRLKRKGL RGIQVEATKT MKVDTMPEST  780
GEEDFFRISR KQAEERVQRS VVRVQAMFRS YRAQQEYRRM KMAHEQAELE FCDVDQLR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411638.10.0PREDICTED: calmodulin-binding transcription activator 6
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLM0TPA20.0M0TPA2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P10490_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators