PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P04970_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRF

Protein Properties

Length: 581aa MW: 62697.8 Da PI: 7.0813

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P04970_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2.1e-24	225	269	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ GSMUA_Achr8P04970_001 225 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEN 269 79*****************************************97 PP
2	QLQ	59	1.4e-20	155	191	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyL+an+P+P+ Ll +i++ GSMUA_Achr8P04970_001 155 GPFTPSQWLELEHQALIYKYLVANVPIPATLLIPIRR 191 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.4E-12	155	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.9E-15	156	190	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.723	156	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.417	225	269	IPR014977	WRC domain
Pfam	PF08879	2.1E-20	226	268	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MDFGGVLGMD ALVGASSEGG GSLFSSSFTT SLAPSDTELG RQGGLRGSIL QKHDRPAAEP 60 EDCDWRSLKM ARPEELVTAP TKAAPFLLRS NSHPLFPDGE QMLSFSSASP PSTTQCYIGN 120 AGNPQQMQAA EERLMELLSF FSNASMQGVL ARLRGPFTPS QWLELEHQAL IYKYLVANVP 180 IPATLLIPIR RSLGASGFPP LSAGSFGSGA LGWEPFHLGY SGNADPEPGR CRRTDGKKWR 240 CSRDAVADQK YCERHMNRGR HRSRKHVENQ TGNAAKAMPT TASSQSASAV LGGASTNTLT 300 ISLQQSKSLQ SNITDPCPLQ FNGLLMSKGD HNVCSLNSKS LSAASPVNQK PDSDILPPVS 360 DQHNPFEETS SRTEFGLVSP DSLLNPPSIS FSNNVNFMAT PKLNEQQIQS HPFRHFIDDW 420 PKTQSDRSTI TWPEVDKTQS DRTQLSISIP TAYSDFSSSS CNHDKPALSK LSREYDAIHM 480 PSRQANWRPI PWEASMAGPL GEVLTSTKST PKDQSKNHSS SSLNLLTEGW DSRLESSPTG 540 VLHKTSFGSL SNSTGSSPSA ENSKTHDSTG SLCSGLLGST L

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MDFGGVLGMD ALVGASSEGG GSLFSSSFTT SLAPSDTELG RQGGLRGSIL QKHDRPAAEP  60
EDCDWRSLKM ARPEELVTAP TKAAPFLLRS NSHPLFPDGE QMLSFSSASP PSTTQCYIGN  120
AGNPQQMQAA EERLMELLSF FSNASMQGVL ARLRGPFTPS QWLELEHQAL IYKYLVANVP  180
IPATLLIPIR RSLGASGFPP LSAGSFGSGA LGWEPFHLGY SGNADPEPGR CRRTDGKKWR  240
CSRDAVADQK YCERHMNRGR HRSRKHVENQ TGNAAKAMPT TASSQSASAV LGGASTNTLT  300
ISLQQSKSLQ SNITDPCPLQ FNGLLMSKGD HNVCSLNSKS LSAASPVNQK PDSDILPPVS  360
DQHNPFEETS SRTEFGLVSP DSLLNPPSIS FSNNVNFMAT PKLNEQQIQS HPFRHFIDDW  420
PKTQSDRSTI TWPEVDKTQS DRTQLSISIP TAYSDFSSSS CNHDKPALSK LSREYDAIHM  480
PSRQANWRPI PWEASMAGPL GEVLTSTKST PKDQSKNHSS SSLNLLTEGW DSRLESSPTG  540
VLHKTSFGSL SNSTGSSPSA ENSKTHDSTG SLCSGLLGST L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120983	5e-43	AC120983.6 Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete sequence.
GenBank	AK073578	5e-43	AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.
GenBank	AP014959	5e-43	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	5e-43	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412290.1	0.0	PREDICTED: growth-regulating factor 6-like isoform X1
Swissprot	Q6AWY3	1e-121	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	M0TMQ0	0.0	M0TMQ0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P04970_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-67	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]