PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr7P26050_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 40275.7 Da PI: 4.3873 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.6 | 2e-22 | 41 | 157 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p+G+ h deelv +L ++ g+ ++ +v++ev+ ++vePw+ p e+ wy +++ + ++++g+ + ++t+sgyWk t d GSMUA_Achr7P26050_001 41 PVGIDIHSPDEELV-LFLDQRKPGDATPD-NVVTEVNPFNVEPWNSP------ENIWYLYHSGALRSPNGNSEMKVTRSGYWKPTN-D 119 89999999******.88999888888777.89**************9......578****************************96.5 PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++ ++g k tL fy+g++p ge+t Wvm ey++ GSMUA_Achr7P26050_001 120 LKIYT-STCAIGRKMTLEFYSGKEPFGERTGWVMYEYQA 157 78888.7899***************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-28 | 36 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.588 | 40 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-11 | 41 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MQRFVVLIFT FRFSRAYQFR VCIYIYQFRI DMCPSAIESV PVGIDIHSPD EELVLFLDQR 60 KPGDATPDNV VTEVNPFNVE PWNSPENIWY LYHSGALRSP NGNSEMKVTR SGYWKPTNDL 120 KIYTSTCAIG RKMTLEFYSG KEPFGERTGW VMYEYQAEQH MSNGYNSSKK NYGSLCRVFQ 180 QTDRRTNQEE NFFSASAGDS GGEYIERILL TLLEKEEGNS SSRISANNSQ TVAEKGQEQS 240 ALSSRRPDEP LPENSNENMF GTCDFSNGEF LEINDLYCPE IPSASSDNSS LMSVNSDEFF 300 DTDALLRDIE TDHGLGVEEE LTYHRFSISV PTESSQVVIR PSPPDVIIFK SFIC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-17 | 39 | 181 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-17 | 39 | 181 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-17 | 39 | 181 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-17 | 39 | 181 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-17 | 39 | 181 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-17 | 39 | 181 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-17 | 39 | 181 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-17 | 39 | 181 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018684699.1 | 0.0 | PREDICTED: NAC domain-containing protein 72-like isoform X1 | ||||
TrEMBL | M0TKU1 | 0.0 | M0TKU1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P26050_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10916 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54330.1 | 3e-24 | NAC domain containing protein 20 |