PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P26050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 354aa    MW: 40275.7 Da    PI: 4.3873
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P26050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.62e-22411572128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                            p+G+  h  deelv  +L ++  g+ ++  +v++ev+ ++vePw+ p      e+ wy +++ + ++++g+ + ++t+sgyWk t  d
  GSMUA_Achr7P26050_001  41 PVGIDIHSPDEELV-LFLDQRKPGDATPD-NVVTEVNPFNVEPWNSP------ENIWYLYHSGALRSPNGNSEMKVTRSGYWKPTN-D 119
                            89999999******.88999888888777.89**************9......578****************************96.5 PP

                    NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             ++++ ++ ++g k tL fy+g++p ge+t Wvm ey++
  GSMUA_Achr7P26050_001 120 LKIYT-STCAIGRKMTLEFYSGKEPFGERTGWVMYEYQA 157
                            78888.7899***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-2836181IPR003441NAC domain
PROSITE profilePS5100531.58840181IPR003441NAC domain
PfamPF023651.8E-1141156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MQRFVVLIFT FRFSRAYQFR VCIYIYQFRI DMCPSAIESV PVGIDIHSPD EELVLFLDQR  60
KPGDATPDNV VTEVNPFNVE PWNSPENIWY LYHSGALRSP NGNSEMKVTR SGYWKPTNDL  120
KIYTSTCAIG RKMTLEFYSG KEPFGERTGW VMYEYQAEQH MSNGYNSSKK NYGSLCRVFQ  180
QTDRRTNQEE NFFSASAGDS GGEYIERILL TLLEKEEGNS SSRISANNSQ TVAEKGQEQS  240
ALSSRRPDEP LPENSNENMF GTCDFSNGEF LEINDLYCPE IPSASSDNSS LMSVNSDEFF  300
DTDALLRDIE TDHGLGVEEE LTYHRFSISV PTESSQVVIR PSPPDVIIFK SFIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-173918119168NAC domain-containing protein 19
3swm_B8e-173918119168NAC domain-containing protein 19
3swm_C8e-173918119168NAC domain-containing protein 19
3swm_D8e-173918119168NAC domain-containing protein 19
3swp_A8e-173918119168NAC domain-containing protein 19
3swp_B8e-173918119168NAC domain-containing protein 19
3swp_C8e-173918119168NAC domain-containing protein 19
3swp_D8e-173918119168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684699.10.0PREDICTED: NAC domain-containing protein 72-like isoform X1
TrEMBLM0TKU10.0M0TKU1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P26050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.13e-24NAC domain containing protein 20