PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P22770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 442aa    MW: 48235.1 Da    PI: 6.8691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P22770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09283330455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSMUA_Achr7P22770_001 283 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 330
                            8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.17E-10277334No hitNo description
SuperFamilySSF474591.03E-16277346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.535279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16279345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6283330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-11285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MYRGPPDQLP SCLLDLNWEQ TMESTGHFEA ALSSVDGMAV HKLVGRLPHS HHVGVRLNSP  60
PRPNLSMAGH FLQPQQAMGG LPPSGTPMPL THLDQFSADL GRFSSFGGRN YGHLATQFGF  120
LDTEKLSRTA SSQSLQTSRL PIGREIPAQN RLQLDVNNGE SMNAREESSV SDPASREVSL  180
GAPAWSSEKK RKAPPKGKAK EVGLANSAMD PPKVAEEDAK RCRSNEKNGN EDDALKPKVE  240
QNDGSSGNGN GGQKQGRNAA AKSPEPPKDF IHVRARRGQA TDSHSLAERV RREKISQRMK  300
LLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPHLDID SLANLLPKDM  360
HQTCVYAPPP CVDHSQQGAS LHCVLPDGME TQSAVNLLDS TFHQGLSTHQ PFLDGFESAS  420
SQLGTFWEDD LQNITHMDIG QN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410617.10.0PREDICTED: transcription factor bHLH77-like isoform X2
TrEMBLM0TJW30.0M0TJW3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P22770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-59bHLH family protein