PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P22410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 332aa MW: 37335.6 Da PI: 8.8854

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P22410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.9	2e-32	57	110	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ GSMUA_Achr7P22410_001 57 PRLRWTPDLHLCFVHAVERLGGKDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 110 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-31	53	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.873	53	113	IPR017930	Myb domain
SuperFamily	SSF46689	5.38E-16	54	113	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	56	111	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-9	58	109	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MATSGSAISR RSSPSERDMV EEDGEDSPRN GGSSSNSTVE ENDRKVAVRQ YVRSKNPRLR 60 WTPDLHLCFV HAVERLGGKD RATPKLVLQL MNVKGLSIAH VKSHLQMYRS KNEDSGHGID 120 LNLIHTTHYI SFCFCNQLQL MIAASPFAIA NPRNLMQGGQ PHAYSLSHLP LLHAFHQRPN 180 SKSRPDDVSW GSHRYWMPNQ ILARAMATTG SGSYTEMILG EKSRITSNQD TGKGSETQLF 240 HDHTGHKPRE TESCYFRTRI EERRQVRREA GDHEPDLALS LHTGPRQEKR PKTWEEEQVD 300 SNLSLALFPP SSSSLDIWSR DDAKASSRST AG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-16	58	110	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	58	110	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	58	110	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	58	110	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018684418.1	0.0	PREDICTED: uncharacterized protein LOC103992543 isoform X1
TrEMBL	M0TJS7	0.0	M0TJS7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P22410_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-39	G2-like family protein