PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P20950_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 27412.7 Da PI: 6.874 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62 | 8.9e-20 | 68 | 121 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe+ ++++a+++ eLA+ lgL+ rqV vWFqNrRa++k GSMUA_Achr7P20950_001 68 KKRRLNSEQVRTLERNFEMGNKLDADRKMELARALGLQPRQVAVWFQNRRARWK 121 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.9 | 5.8e-38 | 67 | 157 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl++eqv++LE++Fe+ +kL+ +rK+elar+LglqprqvavWFqnrRAR+k kqlEkd++ Lkr+++ +k+ene+L++ +++L GSMUA_Achr7P20950_001 67 EKKRRLNSEQVRTLERNFEMGNKLDADRKMELARALGLQPRQVAVWFQNRRARWKIKQLEKDHDELKRQLEIMKTENEALQARNKKLL 154 69*************************************************************************************9 PP HD-ZIP_I/II 89 eel 91 +el GSMUA_Achr7P20950_001 155 SEL 157 887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.89E-20 | 59 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-19 | 66 | 127 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.2E-17 | 68 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.60E-15 | 68 | 124 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 74 | 121 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.6E-6 | 94 | 103 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.6E-6 | 103 | 119 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.9E-7 | 123 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MACNRMPLFF PANLVLQTAH EENHQQQLHT STCGMGNRSI PFSRVEACEE MNVEEDLSDD 60 ALQPGGEKKR RLNSEQVRTL ERNFEMGNKL DADRKMELAR ALGLQPRQVA VWFQNRRARW 120 KIKQLEKDHD ELKRQLEIMK TENEALQARN KKLLSELLAL KDREPSEPIN LNKETEGSSS 180 SDTDLDFSRR RPSSVSQPRR SSKSETAKNE GFCNMFCNTD EQSALWAWSE QHNYHH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 123 | RRARWKIKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410378.2 | 1e-170 | PREDICTED: homeobox-leucine zipper protein ATHB-23-like | ||||
Swissprot | Q8LC03 | 5e-70 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | M0TJD2 | 1e-175 | M0TJD2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P20950_001 | 1e-175 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26960.1 | 7e-68 | homeobox protein 23 |
Publications ? help Back to Top | |||
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