PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P20810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 599aa    MW: 67047 Da    PI: 9.9648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P20810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.5e-16157204455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  E+rRR+riN+++  L++l+P++    sk  +Ka++L +A+eY+k+Lq
  GSMUA_Achr7P20810_001 157 VHNLSEKRRRSRINEKMKALQSLIPNS----SKVTDKASMLDEAIEYLKQLQ 204
                            6*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.49E-15149208No hitNo description
Gene3DG3DSA:4.10.280.104.3E-20150215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-20150220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.466153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-13157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-17159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDVLRFIGLI KVVLEFQCFE HLMREGRESN RGNLFLLISP SRSFRWFRIF WRVMDAHSRS  60
LCSGSSGHAY YQGNQDQISF LLGHLSPTCS SYPSSDFPLA GAEDGFGAVG SSLLHSRMKS  120
PDQDLDSLDC EIEVSEEPPK LAPARTSSSK RNRAAEVHNL SEKRRRSRIN EKMKALQSLI  180
PNSSKVTDKA SMLDEAIEYL KQLQLQVQML SMRNSLSQHP MFLSGGLQPL QALPMGIDFG  240
LGANRAVNAV GMLPLNQVSS VPNTFDLSPS SNQSASIPSV INITKPETPV AMEPSQSHHG  300
SFLLPVSIEE ILTQEMITQQ QPDTRHSPRN LTGESSKTPP RFFNIENEVN SMAADAAQHP  360
GGQASSSVGA DHVAECMLGR VRLQDEPSEK EEFIQHLLLS LARSPRPIPG GREEQDQHRR  420
REKWRRRARM ESRAGIRKWA TKACFRATPS TNTCWRRACA LGSLSARRSS GRSRPSIHGA  480
SMFLHYDLPQ ASNHNLQCSS VRRRHVQRRL IYLHLPHTPE LIPGLSGLIS LFRDLECDQP  540
PSPSLRLVND SKHRKGEREE QPGTRKRTTK DTSFPVLSFI TGGHAGRRLK ETTEHREIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1564589RKRTTKDTSFPVLSFITGGHAGRRLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410364.10.0PREDICTED: transcription factor SPATULA-like isoform X2
TrEMBLM0TJB80.0M0TJB8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P20810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-35bHLH family protein