PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P13880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 410aa MW: 45866.7 Da PI: 6.5946 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.6 | 1e-31 | 115 | 168 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l++m+v gL+++hvkSHLQ+YR+ GSMUA_Achr7P13880_001 115 PRLRWTPDLHLSFVHAVERLGGQDRATPKLVLQMMNVRGLSIAHVKSHLQMYRS 168 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.086 | 111 | 171 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 111 | 169 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.45E-15 | 112 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-22 | 115 | 170 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-9 | 116 | 167 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGEEGEVVVI CEAEDNCEGR STGSNRSPSR KRGLQELDLN EDLMTEGSDE EEEEGSDDDD 60 GGSTTEVAGG GSSSNNSSTN INNDGNSNIN EGGNTAEGSS ERVASVRQYN RSKTPRLRWT 120 PDLHLSFVHA VERLGGQDRA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK LDDSGKEKSI 180 ISSVLSPMDL HLRRGDRLHE MLYHRTASYQ PFRMENGGYF ASRSMHGPDR LYNLLQPPQY 240 QQPLELKPSR LGYLQNRLHE WTFNQQRATR DGYFNERGPA KGSLHDMILN KEGKAFTSRW 300 FDVRDTVTGK GNPRTENQLL DQRNGAQTME IGSRIGSFDW IGSSTRPLVK GVPVNPVSTG 360 SVVACAGSSN DYNKSRSNLY DPFVINSTKH QFDDPFRLEV VFFDPSMPRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-18 | 116 | 170 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018684410.1 | 0.0 | PREDICTED: uncharacterized protein LOC103991616 isoform X1 | ||||
TrEMBL | M0THC5 | 0.0 | M0THC5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P13880_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-35 | G2-like family protein |