PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P07280_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 193aa MW: 21271 Da PI: 5.186 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2e-14 | 10 | 56 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr++lP+ +K +Ka+ L ++++++k+L GSMUA_Achr7P07280_001 10 KSHSEAERRRRERINGHLAKLRSMLPNT-----TKTDKASLLAEVIQHVKEL 56 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.717 | 7 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-12 | 10 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-4 | 10 | 59 | No hit | No description |
SuperFamily | SSF47459 | 8.77E-15 | 11 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-14 | 11 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-13 | 13 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.491 | 91 | 173 | IPR002912 | ACT domain |
Gene3D | G3DSA:3.30.70.260 | 5.6E-8 | 93 | 168 | No hit | No description |
CDD | cd04873 | 6.99E-11 | 93 | 158 | No hit | No description |
SuperFamily | SSF55021 | 5.26E-7 | 93 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEAKAFAASK SHSEAERRRR ERINGHLAKL RSMLPNTTKT DKASLLAEVI QHVKELKRQT 60 LEIVEESPLP TEDDELTVDS ICDDDGKFIV RASLCCDDRP DLLPDLTSAL KTLKLRILKA 120 EITTVGGRVK NVLVITEEHN ASGYDDEQEL VAAIEDALKG VVEQTAEHDL SSSGGTKRQR 180 TTSLLSAVEH SSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 20 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009407785.1 | 1e-134 | PREDICTED: transcription factor bHLH30-like | ||||
Refseq | XP_018684163.1 | 1e-134 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 2e-65 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | M0TFG8 | 1e-136 | M0TFG8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P07280_001 | 1e-137 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 4e-49 | basic helix-loop-helix 32 |
Publications ? help Back to Top | |||
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