PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P03840_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 332aa MW: 36038.6 Da PI: 6.7739

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P03840_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.9	2.4e-09	141	191	1	51
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ek++ +r NReA r++R++Kka + Lee+++ L a N++L k+l++ GSMUA_Achr7P03840_001 141 EKSDSSKKRPCNNREAVRKYREKKKAHAASLEEEAAHLRAINQQLFKRLQN 191 78889999**************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.8E-12	139	209	No hit	No description
SMART	SM00338	4.4E-7	141	208	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.5E-13	144	198	IPR004827	Basic-leucine zipper domain
CDD	cd14686	3.64E-11	147	200	No hit	No description
SuperFamily	SSF57959	2.13E-6	148	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MSVSRHRYAL SSPSNPPPSL PFRALALALP PSFFHVIPPI ACKPPTPHLR LCLLPSPVIM 60 DDGEPDLSNP EVFSTPGAGE DLPSSCSMDS FFDKILNDGH TCTHTHTCNP PGPNLSHTHT 120 CFHVHTKILS SPPDETAESV EKSDSSKKRP CNNREAVRKY REKKKAHAAS LEEEAAHLRA 180 INQQLFKRLQ NQAALEAEIA RLKCLLVDLR GRIEGEIGPF PYHKPVKGSG DFVSNVTQGN 240 MLAGAQVLNP CNFHCDDQVN WFYPGMHGKD VGETGVFDDQ GLGVCEIGNM QCMGSSTSGS 300 QDFASCKSKT AKPVDCSSNA TRLEGARAPE DS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408221.1	0.0	PREDICTED: basic leucine zipper 19
Refseq	XP_018684388.1	0.0	PREDICTED: basic leucine zipper 19
Swissprot	Q8VY76	2e-86	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	M0TEH4	0.0	M0TEH4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P03840_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4175	35	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	2e-63	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]