PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P34680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 379aa    MW: 41297.6 Da    PI: 7.4297
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P34680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.89.2e-32248303156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W+peLH+rFv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  GSMUA_Achr6P34680_001 248 KARRCWSPELHRRFVFALQQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 303
                            68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3245305IPR017930Myb domain
SuperFamilySSF466891.37E-17245306IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-29245307IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-26248303IPR006447Myb domain, plants
PfamPF002494.4E-6250301IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGSAAAEFGL DFKLCAMRTV GGFLKEAAAA VQSSDGGVAK LENSVRSLEE ERRKIEAFKR  60
ELPLCMLLLT DVIEGLKKEL ERCRGDRFVH VFQELMPIRS RCEEEGGAKL EVDCKDKKKW  120
MSSAQLWSDY SSDDNRNDDD QSVADERDGG PDRQEEEENL CLESKSGADT FVPFKGMAAL  180
VMSSKQVTPT AGLSDLSLRS PAAGSASFPV SVVAGNHPGS GSVSKCVGRA PTSTAGAHLS  240
LQLQQQRKAR RCWSPELHRR FVFALQQLGG AQVATPKQIR ELMKVDGLTN DEVKSHLQKY  300
RLHTRKMPNA SPPASRPVVV LGGLWVPPEN HTAPPQKSVS QSGSPQSPLQ LADARRAISP  360
TAGDSCEEEG GKSECHNWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-14248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-14248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-14248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-14248301154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407424.20.0PREDICTED: myb family transcription factor EFM-like
TrEMBLM0TCR10.0M0TCR1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P34680_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-53G2-like family protein